PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G260600.1.p
Common NameSb02g029530, SORBIDRAFT_02g029530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 282aa    MW: 30760.1 Da    PI: 6.6294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G260600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09119166455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Sobic.002G260600.1.p 119 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 166
                           8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-17113182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.65E-12113170No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16115180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.656115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-7119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASFPHFTQM EHGLAGASAH GTPSFLFCHG AATADSASLE TSSGVLDTSP QGTASDDKKP  60
RKPREDSASF SSAHSKDSNS KESTKKKGGK RDRSSKEVDE EEPKGYIHVR ARRGQATDSH  120
SLAERVRRER ISERMRVLQA LVPGCDKVTG KALILDEIIN YVQSLQNQVE FLSMRIASLS  180
PVLYGFGMDT DAFSDHTQKI EGMLHHEALG MPSSVLNRPP SETHMDTHNS TSSPSYEVHG  240
DGGTSISFPQ DNGSYMVQTV GEPRQELFNQ VVFSNHMCSF Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G260600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855810.0BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462650.10.0transcription factor bHLH137 isoform X2
TrEMBLC5X5B10.0C5X5B1_SORBI; Uncharacterized protein
STRINGSb02g029530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-40bHLH family protein