PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G260800.1.p
Common NameSb02g029550, SORBIDRAFT_02g029550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 228aa    MW: 23747.3 Da    PI: 9.7625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G260800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20104153255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++ a+++++g
  Sobic.002G260800.1.p 104 QYRGVRRRP-WGKWAAEIRDPE----KaARVWLGTFATPEEAARAYDDAARRFKG 153
                           69*******.**********73....35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-19103161No hitNo description
PROSITE profilePS5103224.79104161IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22104162IPR016177DNA-binding domain
SMARTSM003807.4E-35104167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32104162IPR001471AP2/ERF domain
PRINTSPR003671.8E-11105116IPR001471AP2/ERF domain
PfamPF008471.8E-13105153IPR001471AP2/ERF domain
PRINTSPR003671.8E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MHGQRGVVGS RSPPRHGREV PKVEPAAGLG GRGFLGHSYS AARADYDVAV MAAALTHVVC  60
GATEPPRGGE TAAAAALPPG PRRQDAGGGG GATSTTELQA RAQQYRGVRR RPWGKWAAEI  120
RDPEKAARVW LGTFATPEEA ARAYDDAARR FKGAKAKLNF PTTTTTASSS SSATETVEEF  180
PDLGQYLHIL QSSDDVDVRA VAAGLPLMNR LPPPGDGQGQ DHGSSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21100166168ATERF1
3gcc_A4e-21100166168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G260800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278391e-100KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460502.11e-162ethylene-responsive transcription factor RAP2-6
TrEMBLC5X5B31e-161C5X5B3_SORBI; Uncharacterized protein
STRINGSb02g029550.11e-162(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-28ERF family protein