PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G269600.1.p
Common NameSb02g030350, SORBIDRAFT_02g030350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 244aa    MW: 25401.3 Da    PI: 8.6803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G269600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-192777256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                          ++ GVr+++ +grWvAeI+d      +r r +lg+f+ta+eAa+a+++a+++l+ge
  Sobic.002G269600.1.p 27 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTADEAARAYDEAARALRGE 77
                          589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-272785IPR001471AP2/ERF domain
PROSITE profilePS5103220.2052784IPR001471AP2/ERF domain
PfamPF008474.0E-142777IPR001471AP2/ERF domain
SMARTSM003804.6E-322790IPR001471AP2/ERF domain
PRINTSPR003678.7E-82839IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-192885IPR016177DNA-binding domain
CDDcd000187.90E-243385No hitNo description
PRINTSPR003678.7E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAAAAAQDS GRTASATMVT VSRRGRRFVG VRQRPSGRWV AEIKDSAQRV RLWLGTFDTA  60
DEAARAYDEA ARALRGENTR TNFADRAARH GHGGPAGAAR ARLSKNLQHV MARAAAAGRA  120
AACAGVGDQF ALAAVFRHCQ QPAAVAAAQA QAQQQAEPEA VQQVVKHAVK PSFVVPRRTE  180
ATPPSLSSSS VPGGGEVWCV DDDVDAAAEL LCAEEGSFKV SSSVIVPPSF SVSSSESFGL  240
DDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1427831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G269600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8102823e-73DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460546.11e-172ethylene-responsive transcription factor ERF008
TrEMBLC5X6291e-171C5X629_SORBI; Uncharacterized protein
STRINGSb02g030350.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-13related to AP2 11