PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G272900.1.p
Common NameSb02g030660, SORBIDRAFT_02g030660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26553.4 Da    PI: 5.2261
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G272900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-193286256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++ +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Sobic.002G272900.1.p 32 KNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 86
                          67789*************************************************9 PP
2HD-ZIP_I/II121.83.4e-3933124293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal  + e+L+ke+++L ++
  Sobic.002G272900.1.p  33 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQ 121
                           79*************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           l++
  Sobic.002G272900.1.p 122 LEK 124
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-192290IPR009057Homeodomain-like
PROSITE profilePS5007117.3622888IPR001356Homeobox domain
SMARTSM003891.9E-163192IPR001356Homeobox domain
CDDcd000862.23E-173289No hitNo description
PfamPF000465.3E-173286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-203295IPR009057Homeodomain-like
PRINTSPR000318.0E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000318.0E-66884IPR000047Helix-turn-helix motif
PfamPF021836.0E-1388129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGEDDVPEW MMEVGGAGGK GGKGGGGGAL DKNKKRFSEE QIKSLESMFA TQTKLEPRQK  60
LQLARELGLQ PRQVAIWFQN KRARWKSKQL EREYSALRDD YDALLCSYES LKKEKHALLK  120
QLEKLAEMLH EPRGKYGGNA DAGAGDDVRS GVGGMKEEFT DAAGAALYSS EGGGGGKFAH  180
FTDDDVGALF RPSAQPTAAG FTSSSGPPEH QPFQFHSSSC WPSSTTEQTC SSSQWWEFES  240
LSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027GGKGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.204650.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G272900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872580.0BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462710.11e-179homeobox-leucine zipper protein HOX6
SwissprotQ651Z56e-98HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH356e-98HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLC5X6571e-177C5X657_SORBI; Uncharacterized protein
STRINGSb02g030660.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-43homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]