PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G273300.1.p
Common NameSb02g030690, SORBIDRAFT_02g030690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 212aa    MW: 23208 Da    PI: 5.9716
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G273300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.2e-08333434
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                          ++C+ +e+ ++ lfC  ++  lC++C ++ H
  Sobic.002G273300.1.p  3 TICDVCESAPAVLFCAADEAALCRSCDEKVH 33
                          68**************************998 PP
2zf-B_box26.91e-085291237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          +  +C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  Sobic.002G273300.1.p 52 KLARCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                          6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.324147IPR000315B-box-type zinc finger
CDDcd000217.77E-8345No hitNo description
PfamPF006431.0E-6341IPR000315B-box-type zinc finger
SMARTSM003363.3E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.5995196IPR000315B-box-type zinc finger
PfamPF006435.5E-75291IPR000315B-box-type zinc finger
CDDcd000211.60E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP NKLARCDICE  60
NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMETVP  120
METKDPENQR DQKKAPKEQM ANHHNGDHPA CDGNCDDQGN IDSKMIDLNM RPVRTHGQGS  180
NSQTQGVDLS VNNHDSPGVV PTSNSERDAS K*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G273300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409280.0BT040928.1 Zea mays full-length cDNA clone ZM_BFc0153E05 mRNA, complete cds.
GenBankEU9558390.0EU955839.1 Zea mays clone 1548279 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460558.11e-157B-box zinc finger protein 18
SwissprotC0SVM52e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLC5X6601e-155C5X660_SORBI; Uncharacterized protein
STRINGSb02g030690.11e-156(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-76DBB family protein