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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.002G274500.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
SRS |
| Protein Properties |
Length: 328aa MW: 33395 Da PI: 8.9404 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.002G274500.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 221.7 | 1.5e-68 | 100 | 251 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsst 89
sg++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpaakrrerqqqlaa++++aaa++ a + r+ +++ +++ ++++
Sobic.002G274500.1.p 100 SGGVSCQDCGNQAKKDCVHQRCRTCCKSRGFNCGTHVKSTWVPAAKRRERQQQLAALAASAAATTtpG-AGPSRDPTKRPRARLTVATP 187
7899***************************************************9998888777543.44444444567788999999 PP
DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
++ss+++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++
Sobic.002G274500.1.p 188 TTSSGDQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 251
99************************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MAGFPLGGGG HSREAPASSV PPVHPSDAAS FLYAARAGAG LQLWQQHEQQ QQQQQHPFYT 60
SNIIRFSDDP PPGAAPSLTG GAASSSSSRG TRGGGGGGSS GGVSCQDCGN QAKKDCVHQR 120
CRTCCKSRGF NCGTHVKSTW VPAAKRRERQ QQLAALAASA AATTTPGAGP SRDPTKRPRA 180
RLTVATPTTS SGDQQMVTVA ERFPREVSSE AVFRCVRLGP VDQAEAEVAY QTTVSIGGHV 240
FKGILHDVGP HGLPAAAGGG VGAIEYHFRH AGDGSPPSTT AAGDAGGGGG LGNVIVSSAV 300
VMDPYPTPGP YAAFPAGAPF FHGHPRQ*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. Detected throughout the youngest flower primordium. Later relocalizes towards the regions of the presumptive sepal anlagen and remains in sepal primordia until just after their emergence. Also observed on the abaxial side of the young floral meristem. Present in the newly arisen gynoecial primordium. Restricted to the apical parts of the carpels as the open-ended gynoecial cylinder elongates vertically. In the apical regions of the gynoecium, confined to a zone in the interphase between the style and the stigma and fades out later. Within the gynoecium, accumulates in ovule primordia, and, as the ovules developed, restricted to the epidermis of the developing funiculi, to the outer, but not the inner, integuments and to the tip of the nucellus. Also present in the cell layer of the septum that faces the ovary. In the embryo, detected in the cotyledon primordia during late globular to mid heart stage. In addition, transiently expressed in petal and stamen primordia and in the tapetum of the anthers. {ECO:0000269|PubMed:12361963}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers, seeds and seedlings. {ECO:0000269|PubMed:12361963}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033411 | 0.0 | BT033411.1 Zea mays full-length cDNA clone ZM_BFb0154O01 mRNA, complete cds. |
| GenBank | BT087618 | 0.0 | BT087618.1 Zea mays full-length cDNA clone ZM_BFb0133L22 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 3e-45 | Lateral root primordium (LRP) protein-related |
