PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G275000.1.p
Common NameSb02g030850, SORBIDRAFT_02g030850
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SRS
Protein Properties Length: 241aa    MW: 24624.1 Da    PI: 6.5005
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G275000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70289.19.7e-28502003153
                DUF702   3 sgtasCqdCGn.qakkdCaheRCRtCCksrgfdCathvkst.Wvpaakrrerqqqlaaasska.aasaaeaaskrkrel...kskkqsa 85 
                           +g+++Cq+C   +ak  C h  CR C   rg  C  hvk t  vpa++ +e qq++ aas++a a + +   +kr+r +   ++++++a
  Sobic.002G275000.1.p  50 TGGVRCQECRHrRAKAYCPH--CRSC---RGAVCPGHVKTTsHVPASQCSEGQQATLAASASAaAVDVEPIPNKRPRWTalpSAATAAA 133
                           68899****75279999998..8888...9*********9967********97776665555505555777788888776554555555 PP

                DUF702  86 lsstklssaeskkel.etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                           ++ t++ss +++  +   +++ +evs +avfr+vr+++   +e e+aY t+v+i+Ghvf+G+Lyd G++
  Sobic.002G275000.1.p 134 AAPTTTSSVDQPIATtVLERFAREVSLDAVFRRVRLGG--PAEPEVAYYTTVTIAGHVFRGVLYDVGTN 200
                           66666777766665505677****************98..57889**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-3352200IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.2E-14154198IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQPSDAPSFL STTPAEGSFE PRQQESEELG GAASSPSPSP SRATRAGGET GGVRCQECRH  60
RRAKAYCPHC RSCRGAVCPG HVKTTSHVPA SQCSEGQQAT LAASASAAAV DVEPIPNKRP  120
RWTALPSAAT AAAAAPTTTS SVDQPIATTV LERFAREVSL DAVFRRVRLG GPAEPEVAYY  180
TTVTIAGHVF RGVLYDVGTN THSGSTAAAS DTDGSGEEVG SSSSSLSTTG GSYLDLTLGL  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G275000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460567.11e-172protein SHI RELATED SEQUENCE 1
TrEMBLC5X6761e-170C5X676_SORBI; Uncharacterized protein
STRINGSb02g030850.11e-171(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2105377
Representative plantOGRP1959722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.17e-13SHI-related sequence 4