PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G280800.1.p
Common NameSb02g031340, SORBIDRAFT_02g031340
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 216aa    MW: 22590.4 Da    PI: 9.162
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G280800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.41.5e-18143195355
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                           +++r +r++kNRe+A rsR+RK+a++ eLe+kv+ L+ eN++L+ + ++l+  
  Sobic.002G280800.1.p 143 SDRRKKRMIKNRESAARSRARKQAYVRELERKVQMLQDENESLRVKYDQLRVS 195
                           689*******************************************9999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-16141205IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.151143193IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.4E-17143197No hitNo description
PfamPF001703.8E-16144195IPR004827Basic-leucine zipper domain
CDDcd147079.65E-19145192No hitNo description
SuperFamilySSF579591.69E-13145196No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAAIDMEDDD DIWANTASSP SASPPQPVAA ASTCSAFIST QLSLNSRLHL LSSAAAAGGS  60
SPTTRGVGAG AYAADGVRHH MSLGVGGGFR NAVASPASSF FPYNLDSAAA DVAPLDAGPA  120
RGLLEDEMCL GAGAAATWAG GGSDRRKKRM IKNRESAARS RARKQAYVRE LERKVQMLQD  180
ENESLRVKYD QLRVSVEVAV PIVRKTLQRM PSAPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G280800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460587.11e-155bZIP transcription factor TRAB1
TrEMBLC5X6W71e-154C5X6W7_SORBI; Uncharacterized protein
STRINGSb02g031340.11e-155(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97643044
Representative plantOGRP1475044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.26e-21basic region/leucine zipper motif 27