PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G287400.3.p
Common NameSb02g031970, SORBIDRAFT_02g031970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 646aa    MW: 71011.3 Da    PI: 8.0131
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G287400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.94.9e-29326377152
                RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  Sobic.002G287400.3.p 326 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 377
                           5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.803316397IPR003035RWP-RK domain
PfamPF020421.7E-25329377IPR003035RWP-RK domain
SuperFamilySSF542771.41E-22536634No hitNo description
Gene3DG3DSA:3.10.20.2404.4E-26544628No hitNo description
PROSITE profilePS5174522.673547630IPR000270PB1 domain
SMARTSM006661.2E-21547630IPR000270PB1 domain
PfamPF005642.4E-16548628IPR000270PB1 domain
CDDcd064071.49E-40548628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MGLPVFEKGS YNCLGVIELI MTRQKLNFTS ELNTICSALQ AVNLRSTEVS SIPRIKFSTA  60
SYKDALPEIL EVLRAACLTH KLPLAQTWVT CAQQGKRGSR HSDENYRYCI STIDEACFVN  120
EAEMRGFHEA CSEHHLLRGE GVAGKAFTTN QPCFLPDIGS STKLEYPLSH HAKIFKLKGA  180
VAIRLRCTRT GTADFVLEFF LPTDCEALEE QKTVLDSLSS TMRGVCQTLR VVTDREMEDE  240
AVLEMNELNS FTPQGKDKVE ELSFGGKSAD RRGEASWTSL AGTSQQESEL AALRMHGMFS  300
PGGQGPSLSG VQATAEGSKA KRRTKAEKTV SLQVLRQYFA GSLKDAARSL GVCPTTLKRI  360
CRQHGITRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL NTLYKDLTNT SISSDNNLSG  420
SVMVPPTNQS NLTDFNKHQP HKSSSNVPST SHSHSSCSHS SKSSPSCSGG ATKHAQQGII  480
DLIKSKNPVK DSSIQTLQTE NPSLYEHFSV HEAPIDLLQD VTEKANGGHH SSPSPSSHNP  540
KQNTDANMRV KATFGSEKVR FRLNPECNFQ ELKHEIAKRL SIVDTNPLVL KYLDDDSEWV  600
LMTCDADLQE CLHVYKLADI QTIKISVHLA ISPATRVTTG HTGLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G287400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9712710.0EU971271.1 Zea mays clone 360961 NIN-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309543.10.0protein NLP1
RefseqXP_021309544.10.0protein NLP1
TrEMBLA0A1B6QDX70.0A0A1B6QDX7_SORBI; Uncharacterized protein
TrEMBLC5X7L50.0C5X7L5_SORBI; Uncharacterized protein
STRINGSb02g031970.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.21e-141Nin-like family protein