PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G290600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 664aa    MW: 72693.2 Da    PI: 8.0684
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G290600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19143244199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sdv++ g +++p+ +a ++         +++ +  +  +d +g +W++++ yr+++ r+++t+GW++Fv+ ++L  gD+vvF
  Sobic.002G290600.1.p 143 FAKTLTQSDVNTGGGFTVPRLCALSIfpeldysF-DPPLQ-FIPATDVHGVEWTFRHVYRGNPPRHLITAGWSNFVHNKKLLPGDSVVF 229
                           89**************************999953.44443.69999******************************************* PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++ +++++r+
  Sobic.002G290600.1.p 230 V--REEDGKVHIGLRRA 244
                           *..5589999**99986 PP
2Auxin_resp103.62.3e-34276359183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+ +++Fevv++Pras++eF+v+++ v++++++++++G Rfkmafeted s++++ +Gt++gv+ +dp rWp S+Wr+L+
  Sobic.002G290600.1.p 276 AARLAAAGQPFEVVHYPRASAPEFCVRADAVKESMRSPWCPGLRFKMAFETEDLSRISWfMGTIAGVEPADPARWPLSPWRLLQ 359
                           678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-30135246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-25138245IPR015300DNA-binding pseudobarrel domain
CDDcd100176.10E-19142239No hitNo description
SMARTSM010191.5E-16143245IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674143245IPR003340B3 DNA binding domain
PfamPF023629.4E-17143244IPR003340B3 DNA binding domain
PfamPF065076.3E-30276359IPR010525Auxin response factor
PROSITE profilePS5174514.387572653IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MSTCAPTRLG TTLTFAAREP PSPEPEDKGR DVHPQLWQAC AGSMCAVPPV GAADYYFPQG  60
HAEQAGAAVD LRVVPPFVAC RVAAVRLMAE PDTDDIYAKI RLVPLRPWEP VTDVGDALLG  120
EGSRGGDGDG QQRRRRRPRP LSFAKTLTQS DVNTGGGFTV PRLCALSIFP ELDYSFDPPL  180
QFIPATDVHG VEWTFRHVYR GNPPRHLITA GWSNFVHNKK LLPGDSVVFV REEDGKVHIG  240
LRRAKRVFCG GNAGRSGAAV AGPSDGKVPA EDVVEAARLA AAGQPFEVVH YPRASAPEFC  300
VRADAVKESM RSPWCPGLRF KMAFETEDLS RISWFMGTIA GVEPADPARW PLSPWRLLQV  360
TWDEPELLQN VKRVCPWRVE LVSSMPNLPW FSPPPRKKPR TPAYTETLSE SERQQLFDPA  420
FPFPPTPPLP FFSDLHLSKY LEQSLLSYGI RPADHQAPPA PRIDTDLKNG SPTPRSPSTE  480
AKKGDDVKPP GTIMLFGRAI LTEEQMKRSN GSGGVPTSPR ATSSGDEKAS NTSDRSRSDV  540
SHGSPAAKKI SPSSWRLWRS GDSSPSEFAL EPGQCKVFVE SETLGRNLDL SALGSLEELC  600
ARLSSMFGIS NNAELRSHMV YRTISGEVKH IGDEPFSVFV KSARRITIYT DRRDAGSDNT  660
GNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-713238051388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394400PRKKPRT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G290600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309253.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A1B6QE140.0A0A1B6QE14_SORBI; Auxin response factor
STRINGSb02g032210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-144auxin response factor 16