PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G291850.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 338aa    MW: 39020.1 Da    PI: 10.0918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G291850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.2e-11131169139
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                           r+ WT+eE+ +++ +v+ +G g Wk+I++++   Rt+ q
  Sobic.002G291850.1.p 131 RQTWTAEEHRQFLYGVQHFGQGEWKSISKYFVPSRTPTQ 169
                           899****************************97787754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071728558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10123169IPR009057Homeodomain-like
PROSITE profilePS500907.642126169IPR017877Myb-like domain
SuperFamilySSF466894.45E-9127169IPR009057Homeodomain-like
SMARTSM007170.0014130185IPR001005SANT/Myb domain
PfamPF002492.5E-8131169IPR001005SANT/Myb domain
CDDcd001673.62E-7133169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDLKAIQEWT SCEAAEFKAL FAKLRNEKSC DRMEVLKKRF PAKTIHQLRD KYAEVFANML  60
CGEIDNEPSR DDTRSDLRDW YKVLEGDTHD SVLRPSVETS LFQPSKQLVL KAPRDQEEIQ  120
KPHCKSSRKE RQTWTAEEHR QFLYGVQHFG QGEWKSISKY FVPSRTPTQH TINDVRLVNH  180
DMNNTSHSHT EPGKGIPNAS SITLPILTED MDILHDQKQG IPNFPNNFVG KTTHCNHTID  240
SFFQRQGPGT ASPRKQWNVL LAQSRTEHWT WPRRKRRLAT ITKRRRKNNR RTLPNVLTAQ  300
NAQEVLQFAQ GSDNRAKLSC DIVPIKGRDL STTIPPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277PRRKRRL
2272286RRKRRLATITKRRRK
3274285KRRLATITKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G291850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397301.11e-144uncharacterized protein LOC109941190
TrEMBLA0A1W0W6C70.0A0A1W0W6C7_SORBI; Uncharacterized protein
STRINGSb02g034873.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1975668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.19e-12MYB family protein