PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G295400.1.p
Common NameSb02g032670, SORBIDRAFT_02g032670
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 328aa    MW: 35283.8 Da    PI: 4.3721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G295400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.23.1e-2391531128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev..diykvePwdLp.kkvkaeekewyfFskrdkkya...tgkrknratksgy 82 
                           lppG+rF+Pt eelv +yL +++ g+++ +  + i+++     + +Pw+L  ++ ++e++e yfF + ++         r+ r+   g+
  Sobic.002G295400.1.p   9 LPPGVRFDPTPEELVEFYLMPRALGQPTAVPGIiIEDAeaTTSSRHPWKLLtRNRRTEDDEAYFFERVASGDDargGAARQDRSCGGGR 97 
                           79*************************888666588873245667*****74555668889****98766544222456999999**** PP

                   NAM  83 Wkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           W   g+++   +            +++ + k +L + +gr++kg +t Wvmhey++
  Sobic.002G295400.1.p  98 WTWVGQKRFPDQVlplplplrgeAEQVSWGKYSLNLQEGRRRKGGSTGWVMHEYTI 153
                           *****9775444466789998876777899************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-293170IPR003441NAC domain
PROSITE profilePS5100529.0319171IPR003441NAC domain
PfamPF023651.2E-1410153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSAADALGLP PGVRFDPTPE ELVEFYLMPR ALGQPTAVPG IIIEDAEATT SSRHPWKLLT  60
RNRRTEDDEA YFFERVASGD DARGGAARQD RSCGGGRWTW VGQKRFPDQV LPLPLPLRGE  120
AEQVSWGKYS LNLQEGRRRK GGSTGWVMHE YTIAPPRCPP CPVKLCHVAF TGHGQKRQRV  180
PDDDGEGEEL EAGTGMPQHK RVATGTGSTP SSSVITTATP DHGGLGAAHL QNQEEPFPNY  240
YETSSSCPPI QPVSDDGAYH EELPMDQVSC TTEQSSGDMD DLPEFFEGWG DLDTFTDTSG  300
VQDSDYGMAA GILADGGPGD GTFAVTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G295400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0W6A50.0A0A1W0W6A5_SORBI; Uncharacterized protein
STRINGSb02g032670.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-13NAC domain containing protein 52