PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G309200.1.p

Common Name

Sb02g033910, SORBIDRAFT_02g033910

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 908aa MW: 99523.2 Da PI: 7.5231

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G309200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.1	2.2e-21	127	229	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgk 75 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk + + + +rtgC a+l++k+ + Sobic.002G309200.1.p 127 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetagsgvasssSLAPAPRCPDSRTGCLASLTIKLIPsANA 214 6***************99997666.************999988888888765543333347899***********9999 PP FAR1 76 wevtkleleHnHela 90 ++vt+++ +HnH+la Sobic.002G309200.1.p 215 FRVTDFVADHNHPLA 229 *************97 PP
2	FAR1	66.1	9e-21	277	376	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwe 77 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg ++++k++ + + r + trtgC+a++++k + +++ Sobic.002G309200.1.p 277 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRTKQEggatvsanggagsAGTPRPGPPPTRTGCQARMVIKITPCRTYR 363 9***********9976665..899************99999***999876777778899**************** PP FAR1 78 vtkleleHnHela 90 v+k+ HnH+la Sobic.002G309200.1.p 364 VAKFFPGHNHPLA 376 *********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-18	127	229	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.3E-18	277	376	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-22	465	559	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.126	733	780	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-5	750	779	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-6	755	782	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MRPMTTSQNN SLPGVGGSAT HVDPHPPPPQ AIHPTPRSPS PSSFLQTLAQ TLMSAAVDPS 60 RLSGESSPSS PTSSGSSSHS SSGAADAAAT NLAQTASTSA LGDDTDADAP TSPSVGMYFE 120 TEDDAYEFYK AYAARLGFVV RKSNKSKNSR HTVTRRLFVC SKQGFRQEPK KPQDETAGSG 180 VASSSSLAPA PRCPDSRTGC LASLTIKLIP SANAFRVTDF VADHNHPLAS SAPAVSLALL 240 PPSSSHHSIA VAASLPDPRD GPRPDMHFET EEDAYVFYNR YAEHVGFSVR RSYKKRKRGM 300 IVSRIFVCSR EGVSDRTKQE GGATVSANGG AGSAGTPRPG PPPTRTGCQA RMVIKITPCR 360 TYRVAKFFPG HNHPLANPDS VHKLRSHKMR ARAHELGAGE MHRRKQGKGV QLGDAGAALQ 420 YLEELQVENP SVYYAVGVGP DGKSAVNFFW ADAKSIIDYR SFGDVVCFDT TYELNIYGRP 480 FALFVGLDNH KQLLVFGAAL LYDESVQSLK WVFEVFADAM HARHPQTILI DERPECAIAA 540 AEVWPGSNHC TGVWHIYHNS KRHLKQVFES SKSFSNALSH CLFECEDEIE FLSAWEKLIE 600 KHDISDSEWL SRLFLVKEKW ALPYQRTMFS ADILSTLRKD NMINELKREL SEQEDILQFF 660 RRYESILEEH RSKKLHADVD GSQVTLPIPS LRMLKQSSNA YTPEAFKMFQ GEFEAYMNCM 720 SFPCGVVGTI SEYKIVLDEK PSESFVKFDA LDGSATCSCK KFEAVGIQCC HVLKVLDLKN 780 IKELPEQYIL KRWRKDARSV QIGEEPAYAS GGVMRSSSEA RFSNMCRLAS LIASRAAKSE 840 DVMSYIESQS NALLKHLDDI LQTGYPDMGN HAVASSSQPI SFVGSQHPDH STPVGVGAQT 900 TNGLMGL*

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MRPMTTSQNN SLPGVGGSAT HVDPHPPPPQ AIHPTPRSPS PSSFLQTLAQ TLMSAAVDPS  60
RLSGESSPSS PTSSGSSSHS SSGAADAAAT NLAQTASTSA LGDDTDADAP TSPSVGMYFE  120
TEDDAYEFYK AYAARLGFVV RKSNKSKNSR HTVTRRLFVC SKQGFRQEPK KPQDETAGSG  180
VASSSSLAPA PRCPDSRTGC LASLTIKLIP SANAFRVTDF VADHNHPLAS SAPAVSLALL  240
PPSSSHHSIA VAASLPDPRD GPRPDMHFET EEDAYVFYNR YAEHVGFSVR RSYKKRKRGM  300
IVSRIFVCSR EGVSDRTKQE GGATVSANGG AGSAGTPRPG PPPTRTGCQA RMVIKITPCR  360
TYRVAKFFPG HNHPLANPDS VHKLRSHKMR ARAHELGAGE MHRRKQGKGV QLGDAGAALQ  420
YLEELQVENP SVYYAVGVGP DGKSAVNFFW ADAKSIIDYR SFGDVVCFDT TYELNIYGRP  480
FALFVGLDNH KQLLVFGAAL LYDESVQSLK WVFEVFADAM HARHPQTILI DERPECAIAA  540
AEVWPGSNHC TGVWHIYHNS KRHLKQVFES SKSFSNALSH CLFECEDEIE FLSAWEKLIE  600
KHDISDSEWL SRLFLVKEKW ALPYQRTMFS ADILSTLRKD NMINELKREL SEQEDILQFF  660
RRYESILEEH RSKKLHADVD GSQVTLPIPS LRMLKQSSNA YTPEAFKMFQ GEFEAYMNCM  720
SFPCGVVGTI SEYKIVLDEK PSESFVKFDA LDGSATCSCK KFEAVGIQCC HVLKVLDLKN  780
IKELPEQYIL KRWRKDARSV QIGEEPAYAS GGVMRSSSEA RFSNMCRLAS LIASRAAKSE  840
DVMSYIESQS NALLKHLDDI LQTGYPDMGN HAVASSSQPI SFVGSQHPDH STPVGVGAQT  900
TNGLMGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G309200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460729.2	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1B6QEC1	0.0	A0A1B6QEC1_SORBI; Uncharacterized protein
STRING	Sb02g033910.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP13990	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-86	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.002G309200.1.p
Entrez Gene	8080711