PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G312200.2.p
Common NameSb02g034180, SORBIDRAFT_02g034180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 216aa    MW: 21474.7 Da    PI: 10.6921
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G312200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.87.4e-39104182178
                           --SSTT-----.TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadl.seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cq+e+C+a+l ++ k y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfhelsefD+ krsCr rLa+hnerrrk++a
  Sobic.002G312200.2.p 104 RCQAERCNANLmTDEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDIKRSCRLRLAGHNERRRKSSA 182
                           6*********735789************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3297167IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.829102180IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-35103184IPR004333Transcription factor, SBP-box
PfamPF031102.7E-29105179IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDRKSKSTKG SAASSAAASM AALAAAAAAG DSSADPGAED NVPAKMAAVG DVSSSSPVAA  60
RRSVAAAGGA ASSSSPVPAA ARRGAAAAAA ASVAAGGGGG GGPRCQAERC NANLMTDEKP  120
YNRRHKVCEA HSKAPVVLVA GLRQRFCQQC SRFHELSEFD DIKRSCRLRL AGHNERRRKS  180
SADAHGGGGA GAGAGNGFRQ HADQNGPAGN HFQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3396179184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G312200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654451e-130BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462902.11e-148squamosa promoter-binding-like protein 13
SwissprotQ6Z4615e-39SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLC5X9B01e-147C5X9B0_SORBI; Uncharacterized protein
STRINGSb02g034180.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.13e-33squamosa promoter binding protein-like 5