PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G312300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 219aa    MW: 21940.1 Da    PI: 10.5321
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G312300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP120.39.3e-38117192277
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                           Cqve+C+ad+   k+y+rrhkvC++h ka+vvl++gl+qrfCqqCsrfhels+fD++krsCr rLa+hnerrr++ 
  Sobic.002G312300.1.p 117 CQVERCNADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHELSHFDDTKRSCRLRLAGHNERRRRNP 192
                           *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-31110178IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.342114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.47E-34115195IPR004333Transcription factor, SBP-box
PfamPF031107.7E-29117190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MPDSSFASTG MAPSSSAAAS MAALAAAAAS GDGSDDSGAA KNGGAPPTHG VEAGNNPAEL  60
AAAVGGASSS SSRAAARSRV AAAAGASGSS PVAAARSRGA GAVAAAAGGG GGVGPSCQVE  120
RCNADMGVEK RYNRRHKVCD AHRKASVVLL AGLRQRFCQQ CSRFHELSHF DDTKRSCRLR  180
LAGHNERRRR NPAEAHDQNG GRGDPGNHHL HIRSDKPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-321171901184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G312300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682921e-150BT068292.2 Zea mays full-length cDNA clone ZM_BFb0099E12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462903.21e-151squamosa promoter-binding-like protein 13
TrEMBLA0A1B6QED21e-150A0A1B6QED2_SORBI; Uncharacterized protein
STRINGGRMZM2G067624_P021e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.28e-34squamosa promoter binding protein-like 4