PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G320300.1.p
Common NameSb02g034873, SORBIDRAFT_02g034873
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 368aa    MW: 42554.6 Da    PI: 7.5435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G320300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-13131177147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r+ WT+eE+ +++ +v+ +G g W +I++++   Rt+ q+ s+ qk+
  Sobic.002G320300.1.p 131 RQTWTAEEHRQFLYGVQHFGRGEWQSISKYFVPSRTPTQLASHAQKH 177
                           899*****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.6558IPR001005SANT/Myb domain
PROSITE profilePS5129415.27126182IPR017930Myb domain
SuperFamilySSF466891.22E-15127183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-13129180IPR006447Myb domain, plants
SMARTSM007171.3E-10130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-11131179IPR009057Homeodomain-like
PfamPF002493.2E-10131177IPR001005SANT/Myb domain
CDDcd001671.66E-8133178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDLKAIQEWT SCEVAEFKAL FAELRNEKSC DRMEVLEKRF PTKTIHQLRD KYVEVFADML  60
YGEIDDESII DDTTSDLCDW YKLLEGDTHD SVLGPSVETS LFQPSKQLVL KVAGDQEKIQ  120
KPHYKSSRKE RQTWTAEEHR QFLYGVQHFG RGEWQSISKY FVPSRTPTQL ASHAQKHFDR  180
IRNNELDDRR QRHTINDVRL VNHDMNNTSH SHTEPEREKP NASSISLPIL TEDMDILHDL  240
TQGMPNFGQA SNSPSNLAGQ TTHCNHTIES FFQWQGQGTS SPRKQWSVLL AQSRTEHWTW  300
PRRKRHLGGA TTKRRRKNNR RTLPHVLTAQ TPQEVLQFAQ ESDSGAKLSF EMVPIKGRDL  360
HTVIPPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302316RKRHLGGATTKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G320300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804405.11e-166transcription factor DIVARICATA-like
TrEMBLA0A1B6QEK20.0A0A1B6QEK2_SORBI; Uncharacterized protein
STRINGSb02g034873.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1975668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-20MYB family protein