PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G346800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family YABBY
Protein Properties Length: 165aa    MW: 17517.1 Da    PI: 8.2193
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G346800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY128.31e-39131606167
                 YABBY   6 sseqvCyvqCnfCntilavsvPsts...lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                            +e++ yvqCn C til+v vP      l+k+v+v+CG C  +lsv l   + +               l+e +v     +s +++ e 
  Sobic.002G346800.1.p  13 LPERLGYVQCNLCATILLVGVPCGGtlqLLKTVAVQCGSCCGILSVALPPPAPASVELP----------LQEAGVGPPPRDSDESSGED 91 
                           689*******************8642227899*************99877654333222..........34444444333332222222 PP

                 YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                            +t+ ++       d+++   p v++PP ++qr Psayn+fikeeiqrika  P+i+h+eafsaa+knWah+P+i 
  Sobic.002G346800.1.p  92 RETEATV------ADNHA-AFPAVNKPPVRKQRTPSAYNCFIKEEIQRIKARHPSITHKEAFSAASKNWAHLPRIQ 160
                           2222222......12222.35689**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.8E-4214160IPR006780YABBY protein
SuperFamilySSF470952.23E-8109162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.6E-6115162IPR009071High mobility group box domain
CDDcd013908.33E-6117162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSSSPRHPCF GALPERLGYV QCNLCATILL VGVPCGGTLQ LLKTVAVQCG SCCGILSVAL  60
PPPAPASVEL PLQEAGVGPP PRDSDESSGE DRETEATVAD NHAAFPAVNK PPVRKQRTPS  120
AYNCFIKEEI QRIKARHPSI THKEAFSAAS KNWAHLPRIQ KKGE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G346800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9634891e-164EU963489.1 Zea mays clone 263245 axial regulator YABBY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309286.11e-115protein YABBY 7
SwissprotA2PZN81e-54YAB7_ORYSJ; Protein YABBY 7
TrEMBLA0A1B6QF251e-117A0A1B6QF25_SORBI; Uncharacterized protein
STRINGGRMZM2G046829_P018e-95(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Representative plantOGRP1397344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-33YABBY family protein