PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G359300.2.p
Common NameSb02g038000, SORBIDRAFT_02g038000
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 240aa    MW: 24736.5 Da    PI: 8.4911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G359300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006599121123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ Cgk++++   L  H  +H
  Sobic.002G359300.2.p  99 YECSVCGKVYPSYQALGGHKTSH 121
                           99**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-799121No hitNo description
SMARTSM003550.02299121IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-1499123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78599126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-7150177No hitNo description
PfamPF139127.7E-12154179IPR007087Zinc finger, C2H2
SMARTSM003550.43155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MALDAAIDVS SSKPPVPPPS PPRIDSWARG GRRSKRRAGS PASDGGSGGG DHDQSEQEYL  60
ALCLLMLSRG LRGDDATDVG GGAAPTVAKT TQHHHQHGYE CSVCGKVYPS YQALGGHKTS  120
HRKPPTPPTP PPGDEASSGS GGAAHAEEKE KEKVHQCSLC LRTFPSGQAL GGHKRLHYEG  180
GVGDGAKDKD KDAVTKANKA SAAAAATTAV LRDFDLNLPA DGAPPEAKRA RTTTMLLVV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G359300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460947.11e-173zinc finger protein 1
TrEMBLA0A1W0W7321e-171A0A1W0W732_SORBI; Uncharacterized protein
STRINGSb02g038000.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-27C2H2 family protein