PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G359700.1.p

Common Name

Sb02g038030, SORBIDRAFT_02g038030

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 215aa MW: 22164.3 Da PI: 8.4099

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G359700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.4	2.6e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg++ ++ Sobic.002G359700.1.p 2 SCNGCRVLRKGCSDACVLRPCLqgidgAEAQGHATVFVAKFFGRAGLMSFLTAVPETQRPAVFQSLLYEAAGRTINPVSGAVGLLGVGS 90 6*******************9999888899***************************************************** PP DUF260 85 qqleqlkaelall 97 +q +q+++e++l+ Sobic.002G359700.1.p 91 WQTCQAAVETVLR 103 *****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.438	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRVLR KGCSDACVLR PCLQGIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPETQR 60 PAVFQSLLYE AAGRTINPVS GAVGLLGVGS WQTCQAAVET VLRGGAIGPL PEFDVGRDTF 120 ALAARRAVGC STFSTAKRAP TTTRTNVGAP PPVPLPPEPS CDLGLWLSPG SPPAPGERRR 180 PATPSLNSEE SVTTTTTSGG ARGGREPELL NLFV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G359700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065439	0.0	BT065439.1 Zea mays full-length cDNA clone ZM_BFb0156D21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460949.1	1e-151	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-64	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	C5XD46	1e-150	C5XD46_SORBI; Uncharacterized protein
STRING	Sb02g038030.1	1e-151	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-57	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Sobic.002G359700.1.p
Entrez Gene	8078982

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]