PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G360100.1.p
Common NameSb02g038070, SORBIDRAFT_02g038070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 198aa    MW: 20427.7 Da    PI: 8.818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G360100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-054668123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+Cp+Cgk F +   L  H  +H
  Sobic.002G360100.1.p 46 YRCPICGKAFASYQALGGHKASH 68
                          9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-134570IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-94668No hitNo description
PROSITE profilePS5015710.8034673IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-44669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00354668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-9106133No hitNo description
PfamPF139125.9E-8110133IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785111138IPR007087Zinc finger, C2H2
SMARTSM003554.3111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAQDDYLSLC LAALVAACQQ AGAEDDDAAP LRARAASSEL PLALHYRCPI CGKAFASYQA  60
LGGHKASHRK PAAAAYDGRA APSSSSSQHR QKGAAEASSS SSGSGAGAGR HVCTVCHRYF  120
ATGQALGGHK RFHYLHGPSV PASLPPSTAG AGWLDLNSTP LAQDDVPFAG VRRRGEDEEV  180
QRSLPLQAKK HRASNAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G360100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432382e-37AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460951.11e-139zinc finger protein 1
TrEMBLC5XD491e-138C5XD49_SORBI; Uncharacterized protein
STRINGSb02g038070.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Representative plantOGRP1961422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-19zinc finger of Arabidopsis thaliana 6