PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G370800.1.p
Common NameSb02g038960, SORBIDRAFT_02g038960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 302aa    MW: 32780.4 Da    PI: 8.4666
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G370800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.32.5e-33155211158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rakle+++k+  k+rkpylheSRh+hA++R+RgsgGrF
  Sobic.002G370800.1.p 155 EEPIYVNAKQYHAILRRRQTRAKLEAQNKM-VKGRKPYLHESRHRHAMKRARGSGGRF 211
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-37153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.459154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-28156211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-25157179IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860159179IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-25188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPVLLREMED HSVHPMSKSN HGSLSGNGYE MKHSGKKVCD KDSSSESDQS HQEASAVSES  60
SPAEHTSTQS DNDEDHGKDN QNTMKPVLSL GKEGSAFLAP KLDYSPSFAY IPYTADACYG  120
GVGVLTGYAP HAIVHPQQND TTNSPGILPV EPTEEEPIYV NAKQYHAILR RRQTRAKLEA  180
QNKMVKGRKP YLHESRHRHA MKRARGSGGR FLNTKQLQEQ NQQYQALSSS MCSKIIGNSL  240
ISQSGPTCTP SSDTAGASTA SQDRSCLPSV GFRPMTNFSE QGGGGSKLIV NSMQQRVSTI  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-24155216263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195204RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G370800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366480.0BT036648.1 Zea mays full-length cDNA clone ZM_BFb0127N08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463167.10.0nuclear transcription factor Y subunit A-3
RefseqXP_021309485.10.0nuclear transcription factor Y subunit A-3
RefseqXP_021309486.10.0nuclear transcription factor Y subunit A-3
RefseqXP_021309487.10.0nuclear transcription factor Y subunit A-3
TrEMBLC5XDY50.0C5XDY5_SORBI; Uncharacterized protein
STRINGSb02g038960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Representative plantOGRP1192546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-37nuclear factor Y, subunit A3