PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G380200.2.p
Common NameSb02g039710, SORBIDRAFT_02g039710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 1018aa    MW: 113665 Da    PI: 5.5893
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G380200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1183.13e-57211362117
                  CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+ee
  Sobic.002G380200.2.p  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPQSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEE 109
                           5679************************************************************************************* PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                           n++fqrr+ywlLee++ +ivlvhyle 
  Sobic.002G380200.2.p 110 NENFQRRTYWLLEESFMNIVLVHYLEI 136
                           ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.68316142IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038597.7E-5122135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-7429517IPR013783Immunoglobulin-like fold
PfamPF018336.1E-6431504IPR002909IPT domain
SuperFamilySSF812963.32E-17431517IPR014756Immunoglobulin E-set
CDDcd002042.84E-14609721No hitNo description
SuperFamilySSF484033.26E-18615723IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-18623723IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.688629723IPR020683Ankyrin repeat-containing domain
SMARTSM002484300629658IPR002110Ankyrin repeat
PfamPF127961.0E-7635724IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843662687IPR002110Ankyrin repeat
SMARTSM002480.14662694IPR002110Ankyrin repeat
SMARTSM00248290701730IPR002110Ankyrin repeat
SMARTSM000150.038836858IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-8837887IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.828837866IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055838857IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022859881IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.688860884IPR000048IQ motif, EF-hand binding site
PfamPF006128.3E-5862881IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MAEIRKYAMS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPQSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEESFMNIVL VHYLEIKGVK QSFNRAKEAE ENAGLSHADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDNSR ASSRYHPFTE MQQPVDGIMM GNLFGASAPS VSVNNLAAGY  240
LGEMQPTGAN LTNHFSTRND VASVFNETGS ELGGGPKASI DSVLLGEPFQ EYPGGFMDST  300
LYSSVATLGN SLDDGLQTFM SEALYTNNLT QKEAENDGYT DQSVRYPLLK QSSSDLFKME  360
PDGLKKFDSF SRWMNNELPE VADLDIKSSS DAFWSTTETV NVADGSSIPI NEQLDAFVVS  420
PSLSEEQLFS IIDVSPSWAY NGKKTKVLIT GTFLAKKEDV ENRRWSCMFG DAEVSAEVLV  480
DGSLRCYTPV HRSGRVPFYV TCSNRVACSE VREFEFRDSE THYMDTSDQH TTGINEMHLH  540
IRLDKLLSLE QEDYEMYVLS NGNKSELIDT INSLMLDDNL SNLALPFDEK ELSTVRDQNL  600
EKQVKEKLYY WLIHKIHDDG KGPNVLGKEG QGAIHLVAAL GYDWAIKPIV AAGVNINFRD  660
IRGWTALHWA ASCGRERTVG ALIANGAASG PLTDPTQQYP SGRTPADLAS ENGHKGIAGF  720
LAESALTSHL SALTLKESQG GNVEEICGVT APAAEDFAEP SSSQLACVNS QEESLKDSLG  780
AVRKSTQAAA RIFQAFRVES FHRKKVIEYG DDDCGLSDER TLSLISLRNP KPGHGDLHSA  840
AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKNY RKVVWSVGIV EKVILRWRRK  900
RRGLRGFQPE KQLEGPSWQI QPAKAEAEDE YDFLKDGRKQ AEGRLQRALA RVHSMNQYPE  960
ARDQYRRLQA CVNSLQESQA MQDRMLADSA GTDGGDFMAE LEELCRDDGD APMSTIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G380200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0680350.0BT068035.1 Zea mays full-length cDNA clone ZM_BFb0021I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308917.10.0calmodulin-binding transcription activator 3 isoform X3
TrEMBLA0A1B6QFM10.0A0A1B6QFM1_SORBI; Uncharacterized protein
STRINGSb02g039710.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains