PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G380200.3.p
Common NameSb02g039710, SORBIDRAFT_02g039710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 1029aa    MW: 114724 Da    PI: 5.5906
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G380200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1183.13.1e-57211362117
                  CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+ee
  Sobic.002G380200.3.p  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPQSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEE 109
                           5679************************************************************************************* PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                           n++fqrr+ywlLee++ +ivlvhyle 
  Sobic.002G380200.3.p 110 NENFQRRTYWLLEESFMNIVLVHYLEI 136
                           ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.68316142IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-5122135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-7440528IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.32E-17442528IPR014756Immunoglobulin E-set
PfamPF018336.2E-6442515IPR002909IPT domain
CDDcd002042.88E-14620732No hitNo description
SuperFamilySSF484033.26E-18626734IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-18634734IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.688640734IPR020683Ankyrin repeat-containing domain
SMARTSM002484300640669IPR002110Ankyrin repeat
PfamPF127961.0E-7646735IPR020683Ankyrin repeat-containing domain
SMARTSM002480.14673705IPR002110Ankyrin repeat
PROSITE profilePS500888.843673698IPR002110Ankyrin repeat
SMARTSM00248290712741IPR002110Ankyrin repeat
SMARTSM000150.038847869IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-8848898IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.828848877IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055849868IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022870892IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.688871895IPR000048IQ motif, EF-hand binding site
PfamPF006128.4E-5873892IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MAEIRKYAMS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPQSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEESFMNIVL VHYLEIKGVK QSFNRAKEAE ENAGLSHADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDNSR ASSRYHPFTE MQQPVDGIMM GNLFGASAPS VSVNNLGYLG  240
EMQPTGANLT NHFSTRNDVA SVFNETGSEL GGGPKASIDS VLLGEPFQEY PGGFMDSTLY  300
SSVATLGNSL DDGLQTFMSE ALYTNNLTQK EVDALSAAGI TSSKAENDGY TDQSVRYPLL  360
KQSSSDLFKM EPDGLKKFDS FSRWMNNELP EVADLDIKSS SDAFWSTTET VNVADGSSIP  420
INEQLDAFVV SPSLSEEQLF SIIDVSPSWA YNGKKTKVLI TGTFLAKKED VENRRWSCMF  480
GDAEVSAEVL VDGSLRCYTP VHRSGRVPFY VTCSNRVACS EVREFEFRDS ETHYMDTSDQ  540
HTTGINEMHL HIRLDKLLSL EQEDYEMYVL SNGNKSELID TINSLMLDDN LSNLALPFDE  600
KELSTVRDQN LEKQVKEKLY YWLIHKIHDD GKGPNVLGKE GQGAIHLVAA LGYDWAIKPI  660
VAAGVNINFR DIRGWTALHW AASCGRERTV GALIANGAAS GPLTDPTQQY PSGRTPADLA  720
SENGHKGIAG FLAESALTSH LSALTLKESQ GGNVEEICGV TAPAAEDFAE PSSSQLACVN  780
SQEESLKDSL GAVRKSTQAA ARIFQAFRVE SFHRKKVIEY GDDDCGLSDE RTLSLISLRN  840
PKPGHGDLHS AAVRIQNKFR GWKGRKEFMI IRQKIVKIQA HVRGHQVRKN YRKVVWSVGI  900
VEKVILRWRR KRRGLRGFQP EKQLEGPSWQ IQPAKAEAED EYDFLKDGRK QAEGRLQRAL  960
ARVHSMNQYP EARDQYRRLQ ACVNSLQESQ AMQDRMLADS AGTDGGDFMA ELEELCRDDG  1020
DAPMSTIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G380200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0680350.0BT068035.1 Zea mays full-length cDNA clone ZM_BFb0021I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308916.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A1B6QFM60.0A0A1B6QFM6_SORBI; Uncharacterized protein
STRINGSb02g039710.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains