PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G384300.2.p
Common NameSb02g040050, SORBIDRAFT_02g040050
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 647aa    MW: 70804.4 Da    PI: 4.3494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G384300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-133579348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +W++eEd  l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  Sobic.002G384300.2.p 35 SWSAEEDGVLRAQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 79
                          6****************************9.**************7 PP
2Myb_DNA-binding408.8e-1385128146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g W+ eEd ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  Sobic.002G384300.2.p  85 KGGWSREEDMLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 128
                           688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.1372883IPR017930Myb domain
SuperFamilySSF466895.24E-2632126IPR009057Homeodomain-like
SMARTSM007173.1E-113281IPR001005SANT/Myb domain
CDDcd001678.55E-123579No hitNo description
Gene3DG3DSA:1.10.10.601.3E-183686IPR009057Homeodomain-like
PfamPF139211.5E-143696No hitNo description
SMARTSM007173.9E-1384132IPR001005SANT/Myb domain
PROSITE profilePS5129416.65284134IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-1987133IPR009057Homeodomain-like
CDDcd001672.15E-988129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MATGPDLSSS SSGAAAAAAV PDAAAAARKD RHIVSWSAEE DGVLRAQIAL HGTDNWTIIA  60
AQFKDKTARQ CRRRWYNYLN SECKKGGWSR EEDMLLCEAQ KVLGNKWTEI AKVVSGRTDN  120
AVKNRFSTLC KRRAKDEELY QENGVPCSNT NAKRVLTETG CLTPGGAASL LHIKQMSSDL  180
KENLVPNMRL FEQEKSTQDA RQPLATISSN NQDNVNTVKS QNCVKREGNF LNKDDPKVAT  240
LLQQADLLCS LATKIKSDNT SQSMDEAWQQ LQDHLMKKEH NEVPENSGSE IGSLLEELDD  300
LIVDPYESKD EDGQKLSEHI GQTDVDNDHC NGSSQTSIEV TSNMVPEEMM KDCPVDNCKE  360
DNSLCRNVLS GSTEPCPGAI PACGNSSKDQ VAEDSNSMLQ RVESTSPVIT DIDDLIIDPY  420
ESEEEDEENS GEQNRQINVH DEQCFGSSQT VMEVISDMAP DEVMKTCPAG NCEEHNSICQ  480
NVLSGSMEPC PGAEILASEK LSELDEDSRL QCMEFASPVL TNFESKDCGE TPAPQNLNEI  540
AEDSRLQCIE FTSPAHTVLR DKAGVENFAS PSFAVVAKDS KPPSSEFTSP AHTVATFQPY  600
ADDMPTPKFT ASERNFLLSV IELTSPGSRP ETSQHPSCKR ALLNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-293613310107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.290.0leaf| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G384300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0190050.0BT019005.1 Zea mays clone Contig495.F mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307817.10.0transcription factor MYB124 isoform X2
TrEMBLA0A1W0W7D10.0A0A1W0W7D1_SORBI; Uncharacterized protein
STRINGSb02g040050.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-86MYB family protein