PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G395600.1.p

Common Name

Sb02g041070, SORBIDRAFT_02g041070

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 571aa MW: 60675.6 Da PI: 5.8403

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G395600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.2	9.7e-15	115	175	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ Sobic.002G395600.1.p 115 EAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSARISCVTAENAALKQQL 175 78********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-13	112	177	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-13	115	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.151	115	175	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.56E-13	117	175	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-16	117	175	No hit	No description
CDD	cd14704	1.14E-21	118	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MAEPALLAPD PFADLPFPEF QAPVDGDTFA FEDFDLEDLD LDLDVDFDLD LFASDGQLSQ 60 PPPLATSSSS AGSPEGGSSS SGGGGGLRNE ESSESSSRSA SGTDGSDKGK GEDDEAKRRA 120 RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAR ISCVTAENAA LKQQLGGAAG 180 AAPPLPMPMY PAMYPLPMPW MHPAYPMRGS QVPLVPIPRL KPQQPAPTAA EPPAKKARKT 240 KKVASVSFLG LLCLAMLCGC LISVVHRMYP SVDAGEGAAF GPSHHGRILA VEGPHDNVSD 300 GIDPKPPQSG SETLPALLYL PKNGKHVKIN GNLVIKSIVA SEKASLRLPG YDGTSPQKQK 360 KEETSLAIPG YVTPLEAGEV MESAKGVMKN ELMALAPADG NVYREEDGLL PQWFSEAMSG 420 PLLSSGMCTE VFQFDASPSS AHSNGIIPVY SNTMSNSSQN FTQKLPSACP RTVKNRRISY 480 SETIPLRGST SNDTEHFKTP PKNESFGSTK PVSSVVVSVL ADPREAGDGD GEGRISSKSL 540 SRIFVVVLID SVKYVTYSCV LPFKSHSPHL *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MAEPALLAPD PFADLPFPEF QAPVDGDTFA FEDFDLEDLD LDLDVDFDLD LFASDGQLSQ  60
PPPLATSSSS AGSPEGGSSS SGGGGGLRNE ESSESSSRSA SGTDGSDKGK GEDDEAKRRA  120
RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAR ISCVTAENAA LKQQLGGAAG  180
AAPPLPMPMY PAMYPLPMPW MHPAYPMRGS QVPLVPIPRL KPQQPAPTAA EPPAKKARKT  240
KKVASVSFLG LLCLAMLCGC LISVVHRMYP SVDAGEGAAF GPSHHGRILA VEGPHDNVSD  300
GIDPKPPQSG SETLPALLYL PKNGKHVKIN GNLVIKSIVA SEKASLRLPG YDGTSPQKQK  360
KEETSLAIPG YVTPLEAGEV MESAKGVMKN ELMALAPADG NVYREEDGLL PQWFSEAMSG  420
PLLSSGMCTE VFQFDASPSS AHSNGIIPVY SNTMSNSSQN FTQKLPSACP RTVKNRRISY  480
SETIPLRGST SNDTEHFKTP PKNESFGSTK PVSSVVVSVL ADPREAGDGD GEGRISSKSL  540
SRIFVVVLID SVKYVTYSCV LPFKSHSPHL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.11974	0.0	embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G395600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973938	0.0	EU973938.1 Zea mays clone 424664 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461117.2	0.0	bZIP transcription factor 60 isoform X2
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	C5X3Z4	0.0	C5X3Z4_SORBI; Uncharacterized protein
STRING	Sb02g041070.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35
Representative plant	OGRP2171	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56660.1	8e-63	basic region/leucine zipper motif protein 49

Link Out ? help Back to Top
Phytozome	Sobic.002G395600.1.p
Entrez Gene	8072206

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]