PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G003600.2.p
Common NameSb03g000490, SORBIDRAFT_03g000490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 654aa    MW: 72131.8 Da    PI: 6.5376
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G003600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.3e-29588639152
                RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  Sobic.003G003600.2.p 588 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 639
                           589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.676578653IPR003035RWP-RK domain
PfamPF020422.1E-26591639IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MDLDPSPASA HGDGGGCADA WPFDSLTTSM LFSSVSASPQ LQPLPANSSW LTPPSPLWLF  60
EDRHMLPLDA PDAAPEAAVA AAVVEEVQRA RSGNSDTSSK RVEQINHKWQ FHLSLDEDGT  120
DNSSLFKEKL TQALRYFKES TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLLQY  180
RAVSMMYMFS VDGENVGELG LPGRVYKQKV PEWTPNVQYY SSGEYQRLNH AISYNVHGTV  240
ALPVFDPAAQ SCIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEILD HPNVQICNEG  300
RQAALVEILE ILTVVCEEHK LPLAQTWVPC KYRSVLAHGG GLKKSCLSFD GSCMGEVCMS  360
TSDVAFHVID AHMWGFRDAC VEHHLQRGQG VSGKAFISHK PCFSKDIQKF CKLTYPLVHY  420
ARMFGLAGCF AICLQSSYTG NDDYVLEFFL PPDCIDEDDQ NALLESILTL MKRCLRSLKV  480
VGDRYSSGAS LQLSNVLKLE NEEFKTDAQF DNSDGSLHES PGGDRHGGAH KFDNGNKKVL  540
DLTEGQLLTD DYSQDNGTSA GRPNGSGASD SSLLHKTNKP PERRRGKAEK TISLEVLQQY  600
FSGSLKNAAK SLGVCPTTMK RICRQHGISR WPSRKINKVL FLYLLALHQS LSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96470.0leaf| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G003600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0853590.0BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457049.10.0protein NLP3
SwissprotQ5NB820.0NLP3_ORYSJ; Protein NLP3
TrEMBLA0A1B6Q0K40.0A0A1B6Q0K4_SORBI; Uncharacterized protein
STRINGSb03g000490.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein