PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G003800.1.p
Common NameSb03g000530, SORBIDRAFT_03g000530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 689aa    MW: 76895 Da    PI: 6.365
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G003800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22116216198
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v  
  Sobic.003G003800.1.p 116 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL 203
                           99****************************96444.45569999******************************************999 PP

                           E-SSSEE..EEEEE- CS
                    B3  84 ldgrsefelvvkvfr 98 
                             +++++e +v+v+r
  Sobic.003G003800.1.p 204 --RSETGEQRVGVRR 216
                           ..4477778999997 PP
2Auxin_resp95.86.5e-32242323183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a+ha++t+s+F v+Y+Pr s+s+++v+++k++++ k+ + vGmRfkm+fe+ed++ +++sGtvv+  dl+p +W++S W+ Lk
  Sobic.003G003800.1.p 242 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLESSKIGFNVGMRFKMSFEGEDVPVKKFSGTVVDKGDLSP-HWQGSDWKTLK 323
                           789********************************************************************.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-37106245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-36109231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-17114216No hitNo description
PfamPF023622.9E-20116216IPR003340B3 DNA binding domain
SMARTSM010199.9E-18116218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251116218IPR003340B3 DNA binding domain
PfamPF065071.8E-27242323IPR010525Auxin response factor
PROSITE profilePS5174517.952588668IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MAQGRDPELF AELWRACAGP LVELPQTDER VFYFLQGHLE QLQEPTDPAL LADQIKMFQV  60
PNKILCKVVN VELKAETETD EMYAQITLQP EPDQMDLPTL PDPPLPETSR PVVHSFCKIL  120
TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL  180
LTTGWSTFVT SKKLIAGDAF VYLRSETGEQ RVGVRRLVQK QSTMPASVIS SQSMHLGVLA  240
SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLESSKIGF NVGMRFKMSF EGEDVPVKKF  300
SGTVVDKGDL SPHWQGSDWK TLKVKWDEAT NFNGPERVSS WEIEPFDASA PAINIPVQPS  360
MKNKRPRETA ESLDIHALEP AQEFWLSGRP EQHKTSISSN EPNCISVHQV AWTSERPGYS  420
AMSSSICQNS AVIGSWFKDF NSSSKGASPS LPEISQKLFQ VTSNDARVPP WPGLSAYQAE  480
ELSSKLSCNT ALCSYQTEEV APKFSIAVEE KKEPGMFRLF GVNLVNHTRS SGIADKMTVG  540
VGETSMRGAG SFEDSGQLSA LSRVTKDHTH LVNESPREIQ SHQSCSGRNR IKVQMHGHAV  600
GKAVDLGNLD GYVQLMGELE EMFEIKDLGS KEEWKVTFTN DENDTMEVGA VLWQEFCQMV  660
RKIVIHPIGH GSHMEAWPCP GQDGKRDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-147934819357Auxin response factor 1
4ldw_A1e-147934819357Auxin response factor 1
4ldw_B1e-147934819357Auxin response factor 1
4ldx_A1e-147934819357Auxin response factor 1
4ldx_B1e-147934819357Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G003800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587590.0HQ858759.1 Zea mays clone UT1501 ARF transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457052.10.0auxin response factor 1 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLC5XJJ70.0C5XJJ7_SORBI; Auxin response factor
STRINGSb03g000530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP1421044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-180auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]