PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G005500.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 443aa MW: 48934.7 Da PI: 9.9302

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G005500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55	1.5e-17	208	298	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+++ps+v + +l +p +f+++h k e++ ++lede+g+ ++ +++++ l++GW++F+ +++k+gD++vF+l+++++ Sobic.003G005500.1.p 208 FTKAMLPSHVIRGFWLGMPTEFCNKHLPK--EDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESRK 290 89********************99533..4457***********..899888..9********************998666 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v ++r+ Sobic.003G005500.1.p 291 F--KVYIIRA 298 6..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.49E-22	203	299	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-19	203	299	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.68E-25	207	297	No hit	No description
SMART	SM01019	1.5E-17	208	299	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-15	208	298	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.562	208	299	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKR KRGRPPGSKS 60 AKSRIGSPPG EQSPQSKMEQ KVALVKQRVA LLDSASNSSC SDSDKNDELA IVVCHQPAVL 120 HCGDTDDEGN YNLLKALKSR RLDSEQKKLS GALQAHNAQN IITGVTNIAE ASDINGQILS 180 ASVHGNCGSA MARAKEVQAK LPENHLSFTK AMLPSHVIRG FWLGMPTEFC NKHLPKEDTG 240 IMLEDENGED HHTTYLGSRQ GLSGGWRGFA IKHDIKVGDV LVFQLVESRK FKVYIIRANE 300 FTATDGAISL LNLEARKKGK LLSKATRVEH SVPADDDNVV INKAGRLRIS DSDMDFGDVT 360 SFSDFSIIVD RLVIDCKFQE PLRRTYYELC RSQKAFLHRR QSASRRASRR ARRSGRLPTR 420 TCWCGRRPWS PWLCLAWMSG SC*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKR KRGRPPGSKS  60
AKSRIGSPPG EQSPQSKMEQ KVALVKQRVA LLDSASNSSC SDSDKNDELA IVVCHQPAVL  120
HCGDTDDEGN YNLLKALKSR RLDSEQKKLS GALQAHNAQN IITGVTNIAE ASDINGQILS  180
ASVHGNCGSA MARAKEVQAK LPENHLSFTK AMLPSHVIRG FWLGMPTEFC NKHLPKEDTG  240
IMLEDENGED HHTTYLGSRQ GLSGGWRGFA IKHDIKVGDV LVFQLVESRK FKVYIIRANE  300
FTATDGAISL LNLEARKKGK LLSKATRVEH SVPADDDNVV INKAGRLRIS DSDMDFGDVT  360
SFSDFSIIVD RLVIDCKFQE PLRRTYYELC RSQKAFLHRR QSASRRASRR ARRSGRLPTR  420
TCWCGRRPWS PWLCLAWMSG SC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.9365	0.0	pollen

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G005500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311368.1	0.0	B3 domain-containing protein Os01g0234100 isoform X1
Refseq	XP_021311369.1	0.0	B3 domain-containing protein Os01g0234100 isoform X1
Refseq	XP_021311370.1	0.0	B3 domain-containing protein Os01g0234100 isoform X1
Swissprot	Q0JP99	7e-93	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A1B6Q0R0	0.0	A0A1B6Q0R0_SORBI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-34	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G005500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]