PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G005500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 393aa    MW: 43496.5 Da    PI: 10.0992
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G005500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-17158248199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k+++ps+v +  +l +p +f+++h  k  e++ ++lede+g+    ++   +++++  l++GW++F+  +++k+gD++vF+l+++++
  Sobic.003G005500.2.p 158 FTKAMLPSHVIRGFWLGMPTEFCNKHLPK--EDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESRK 240
                           89**********************99533..4457***************..899888..9**********************998666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Sobic.003G005500.2.p 241 F--KVYIIRA 248
                           6..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-22153249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19153249IPR015300DNA-binding pseudobarrel domain
CDDcd100179.60E-25157247No hitNo description
PfamPF023629.2E-16158248IPR003340B3 DNA binding domain
SMARTSM010191.5E-17158249IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562158249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MANDPPPPLK RKRGRPPGSK SAKSRIGSPP GEQSPQSKME QKVALVKQRV ALLDSASNSS  60
CSDSDKPAVL HCGDTDDEGN YNLLKALKSR RLDSEQKKLS GALQAHNAQN IITGVTNIAE  120
ASDINGQILS ASVHGNCGSA MARAKEVQAK LPENHLSFTK AMLPSHVIRG FWLGMPTEFC  180
NKHLPKEDTG IMLEDENGED HHTTYLGSRQ GLSGGWRGFA IKHDIKVGDV LVFQLVESRK  240
FKVYIIRANE FTATDGAISL LNLEARKKGK LLSKATRVEH SVPADDDNVV INKAGRLRIS  300
DSDMDFGDVT SFSDFSIIVD RLVIDCKFQE PLRRTYYELC RSQKAFLHRR QSASRRASRR  360
ARRSGRLPTR TCWCGRRPWS PWLCLAWMSG SC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.93650.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G005500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311371.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP992e-96Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A1B6Q0M70.0A0A1B6Q0M7_SORBI; Uncharacterized protein
STRINGSb03g000666.11e-134(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-35B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]