PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G005500.6.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 376aa    MW: 41776.6 Da    PI: 9.6417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G005500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17141231199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k+++ps+v +  +l +p +f+++h  k  e++ ++lede+g+    ++   +++++  l++GW++F+  +++k+gD++vF+l+++++
  Sobic.003G005500.6.p 141 FTKAMLPSHVIRGFWLGMPTEFCNKHLPK--EDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESRK 223
                           89**********************99533..4457***************..899888..9**********************998666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Sobic.003G005500.6.p 224 F--KVYIIRA 231
                           6..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-22136232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-19136232IPR015300DNA-binding pseudobarrel domain
CDDcd100175.78E-25140230No hitNo description
PfamPF023628.5E-16141231IPR003340B3 DNA binding domain
SMARTSM010191.5E-17141232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKP AVLHCGDTDD  60
EGNYNLLKAL KSRRLDSEQK KLSGALQAHN AQNIITGVTN IAEASDINGQ ILSASVHGNC  120
GSAMARAKEV QAKLPENHLS FTKAMLPSHV IRGFWLGMPT EFCNKHLPKE DTGIMLEDEN  180
GEDHHTTYLG SRQGLSGGWR GFAIKHDIKV GDVLVFQLVE SRKFKVYIIR ANEFTATDGA  240
ISLLNLEARK KGKLLSKATR VEHSVPADDD NVVINKAGRL RISDSDMDFG DVTSFSDFSI  300
IVDRLVIDCK FQEPLRRTYY ELCRSQKAFL HRRQSASRRA SRRARRSGRL PTRTCWCGRR  360
PWSPWLCLAW MSGSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.93650.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G005500.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311371.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP996e-88Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A1W0VVD30.0A0A1W0VVD3_SORBI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-35B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]