PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G012800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 393aa    MW: 41608.9 Da    PI: 4.3228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G012800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19134185156
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                           ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  Sobic.003G012800.1.p 134 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRGA 185
                           689*******.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-12134184IPR001471AP2/ERF domain
CDDcd000182.83E-28134194No hitNo description
SuperFamilySSF541711.7E-20135192IPR016177DNA-binding domain
PROSITE profilePS5103223.196135192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-29135193IPR001471AP2/ERF domain
SMARTSM003801.1E-32135198IPR001471AP2/ERF domain
PRINTSPR003675.4E-10136147IPR001471AP2/ERF domain
PRINTSPR003675.4E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MWPMEEEMFV AVRRTEHVEV TSRAVEVAPA AAKGREAAAG SAVPGPRTVR VFCDDYDATD  60
SSSDEAEEDA VARRRVKRYV QEIRLERAVK EEAPAGRAGA SSAAAMAGAA GERTTTRLVL  120
PGRKRKSDGA AAEPRFRGVR RRPWGKYAAE IRDPWRRVRV WLGTFDTAEE AAKVYDSAAI  180
QLRGADATTN FEQVDDAPVP VPDEVAERLP QPPATASAPA PAASKNASSS ATSYDSGEES  240
HAAAASPTSV LRSFPPSAVA DDTCTKAAAK KPTTSPAPAI PAASAPETDE STGGGTSSVF  300
GCPFSSADDC FGGEFPPLYT DFDLLADFPE PSLDFLADIP EEPLSLAPSI PAGSPEEWPS  360
DAEPASPGRW QQVDDFFQDI TDLFQIDPLP VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-19130191971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G012800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424214e-89EU942421.1 Zea mays clone 1496106 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457105.20.0ethylene-responsive transcription factor CRF2
TrEMBLA0A1B6Q0S90.0A0A1B6Q0S9_SORBI; Uncharacterized protein
STRINGSb03g001296.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-32cytokinin response factor 4