PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G017601.1.p
Common NameSb03g001730, SORBIDRAFT_03g001730
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 271aa    MW: 28263.8 Da    PI: 6.9491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G017601.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-1377123354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+ErrRR+riN  +++Lr+++P +      K++Ka+ L +++ ++++L
  Sobic.003G017601.1.p  77 KNHSEAERRRRERINAHLATLRTMVPCS-----DKMDKAALLAEVITHVQKL 123
                           58*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1366129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.38374123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1077123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-477125No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1478125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-1280129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00987165207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDMGSVPFAD AGLLDAFYGG GHGHNDYGLV SQQLTSPVVL DGGAGGLLDA GAASTEEEAP  60
KRKGDHRRDD KAAMALKNHS EAERRRRERI NAHLATLRTM VPCSDKMDKA ALLAEVITHV  120
QKLKATAARI RDHCAVPADA DDVAVELVQG APPSTTGGGV LVRATLSCDD GADVFADVKQ  180
ALRPLRLSVV GSEVTTLGGR VRFTFLIMSS SSSCGNGSGG DVGAVVVESV HQALQSVLDR  240
ANSALEFAPR ASLLNKRRRV STFESSSSSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
2255259KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G017601.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844481e-124BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457128.10.0transcription factor bHLH30
TrEMBLA0A1B6Q0Z40.0A0A1B6Q0Z4_SORBI; Uncharacterized protein
STRINGSb03g001730.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.13e-23basic helix-loop-helix 32