PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G018700.1.p
Common NameSb03g001940, SORBIDRAFT_03g001940
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 463aa    MW: 47749.1 Da    PI: 6.9751
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G018700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.41.3e-3491184283
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaess 78 
                           +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +             ++++s++ ++s 
  Sobic.003G018700.1.p  91 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLETLpawqptatganaVAPPSSSTHPDSA 179
                           79**************************************************************7766655555442222222222222 PP

                   TCP  79 sssas 83 
                           ++s++
  Sobic.003G018700.1.p 180 ENSDD 184
                           22222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3191182IPR005333Transcription factor, TCP
PROSITE profilePS5136933.25793151IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGDAGQSHSH HHAFQPQLLS FGGVGQHHVH QFTAQAQAAP PAASHSRSRG GGAGGEVAVA  60
PMSASHSRVR GGAGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ  120
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LETLPAWQPT ATGANAVAPP SSSTHPDSAE  180
NSDDEAQAIT VAHTAFDFPG AAGAGGGGSG AGFLPSSLDS DSIADTIKSF FPMAGTGGGE  240
ASSSTAATQS SAMGFQSYTP DLLSRTGNHS QELRLSLQSL PDPMFHHQHQ DRSQQGHGGN  300
GSAQQALFPG AASYSFVGGG GGTMWGEQAQ SQRMLPWNVP DPGGGSTGSY LFNVSQQAVS  360
QQAAHMQAAL GGQSQFFFQR GPLQSSNQPS ERGWPEIVEA DNPMQQQHGG GLSPTVSAIG  420
FTPGIGFSGM RIPTRIQGDE EHNGGSGNGD KPPPSVSSAS HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2098151154Putative transcription factor PCF6
5zkt_B1e-2098151154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G018700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM141e-177PCF5_ORYSI; Transcription factor PCF5
SwissprotQ8LT071e-179PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A1B6Q0V90.0A0A1B6Q0V9_SORBI; Uncharacterized protein
STRINGSb03g001940.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-63TCP family protein