PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G026700.1.p
Common NameSb03g002510, SORBIDRAFT_03g002510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 353aa    MW: 36550.6 Da    PI: 5.5306
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G026700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-06444539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           C+ +e  e++l C  ++  lC+ C    H        H +
  Sobic.003G026700.1.p  4 LCSACEAAEARLLCCADEAALCARCDRDVHAAnrlagkHHR 44
                          7******99******************99955677778554 PP
2zf-B_box30.48.1e-105595337
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          +++C+ ++e ++ +fC +++ llC+ C ++ H        H
  Sobic.003G026700.1.p 55 APNCDICQEAHAYFFCVEDRALLCRACDVAVHTAnafvsaH 95
                          689***************************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.736147IPR000315B-box-type zinc finger
CDDcd000212.55E-7347No hitNo description
SMARTSM003362.5E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS501199.51353100IPR000315B-box-type zinc finger
PfamPF006434.7E-85587IPR000315B-box-type zinc finger
CDDcd000214.71E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLIPH ADVSAPNCDI  60
CQEAHAYFFC VEDRALLCRA CDVAVHTANA FVSAHRRFLL TGVQVGLQPD AAADADDPNP  120
PTAAAASDPL QTPPPPDRKA AAAGGGSPAP LYSDDDIDWA PGADAGAGVG LPDWALVHEQ  180
FSAPPVTRPA DPALARTPAS KRSPRRSLAA AFTVQSGGGL AGGLPDWPLD EFFGFSEYSA  240
GLGFAENGTS KADSGKLGST DGSPAGRSSS DASQDFFGQV PEFHQWSVPE LPSPPTASGL  300
HWQGGPRHGA TTTTDTNTAA VSVPDISSPE NPFRCYAATA AGQPPAKRRR RC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G026700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424800.0BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642770.0BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668550.0BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457163.10.0B-box zinc finger protein 22 isoform X2
TrEMBLC5XL810.0C5XL81_SORBI; Uncharacterized protein
STRINGSb03g002510.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-31light-regulated zinc finger protein 1