PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G028000.1.p
Common NameSb03g002630, SORBIDRAFT_03g002630
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 252aa    MW: 26342.1 Da    PI: 5.8429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G028000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-1758106355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Sobic.003G028000.1.p  58 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 106
                           9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-1256106IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2057115IPR016177DNA-binding domain
SMARTSM003806.2E-3457120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3157115IPR001471AP2/ERF domain
PROSITE profilePS5103222.857114IPR001471AP2/ERF domain
PRINTSPR003673.3E-95869IPR001471AP2/ERF domain
CDDcd000183.79E-2958116No hitNo description
PRINTSPR003673.3E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMSELSSDT SSTSSYSSDP STSTSPRAAA PCSAAAAVSG KKRPRSNGGG ESGSAPAYRG  60
VRMRAWGKWV SEIREPRKKS RIWLGTFPCP EMAARAHDVA ALSIKGARAV LNFPDLARHL  120
PRPASLAPRD VQAAAARAAL MHMHSDGAGS GSGSGGSSSP SSSSSSSTRD AADTDGAAAH  180
DEPEPEPEPQ RQHERQPVEM AAELVFDELA PLWVEDVVEF GGPPSDHTWT PCDGLDAAVG  240
FLHPLPLLWD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-16581141572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G028000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768271e-120EU976827.1 Zea mays clone 991178 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454993.11e-180ethylene-responsive transcription factor TINY
TrEMBLC5XLT01e-178C5XLT0_SORBI; Uncharacterized protein
STRINGSb03g002630.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-43ERF family protein