PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G033000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 1025aa    MW: 113702 Da    PI: 8.8096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G033000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10203245347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W+++E + +++a +q+G++ Wk+I+  +g g++  +++s + ++
  Sobic.003G033000.1.p 203 KWSKDELKNFYEAYRQHGKD-WKKISIAVG-GKSSDMVRSLYTSH 245
                           8*****************99.*********.********977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.968199256IPR017884SANT domain
SMARTSM007173.2E-5200248IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-9201247IPR009057Homeodomain-like
PfamPF002494.5E-9203244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4203245IPR009057Homeodomain-like
CDDcd001673.06E-6203240No hitNo description
PfamPF065845.5E-31644744IPR033471DIRP domain
SMARTSM011357.5E-37644745IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MRRVPLPELP LPPTLIFKRA NSRMAHLSVP PPTFASLLPP VSSSLPLPFF STCIPRPPSR  60
GRSAAETQTG HPTRTRRPIS SAPVLSDPST PPEPAPEQHL LATGPQASAG VDAWFRLCGG  120
GARRERGSGV REAPSRARFR PDPTQQYLSS LKSRTVLMGP AKGSRTINKT IVKGYEDQQH  180
HDDPSSSSKA KQKKKKISDL DPKWSKDELK NFYEAYRQHG KDWKKISIAV GGKSSDMVRS  240
LYTSHRTFLS LPEREATAMG FIALVTGHHN ASQEKTTSHR GYDHIVRASG KARKHGEQQK  300
SIDGPDPHNC HEGKISGFSA SFKKRYYGEL VRNSRNHAVW RRTPRIPVIA PADRSTIDDA  360
TPGIENVINS TKRKYEAANY DCSIVPTNEY SPDRVSGFAE ANKVGLDFKK TRIQQTMAEG  420
QTGIVEHEMT MASKEGNKLV DSLNNNQMLI DSISEDDMLV LDVLNSLVNA PSKMSKLEIN  480
IPSGSLGKTD SALSHRREED HPIIDVSKQR KPVGKSSTSK TRKKKHKKIL DAEVPAEAQN  540
ICGNNLVLPE TLRVGITDDS SLCTDSGRVG IPEASEDISA EVPNAQMETK PEVRMSGRTR  600
RKSQLHCKTK HMSCNEGSDN LQAKKLLHCL SSEPLRRWCT YEWFYSAVDY PWFSNNEFVH  660
YLDHAKLSHL SKLTRSEWSA IRSSLGKPRR FSNNFLAVEK EKLEDYREQV RKIYAQLSDG  720
SRDSLPADLA RPFSIGQQVI VRHPNSRELC DGKVVKLGPD CYKVHFDDPD LGVDIVKDTD  780
CMPVNWLYNR PDNMRRVYLS NNAYSILEMD HIPDLTPSEN GDHAVNGATV LEGLRSLRLT  840
SDIQPKAESI VNNERPPYMS TSDGPTKSRD CPGHNDELES FVAAFVERSL SQARQMFDEE  900
MQANSGSRDD EKSCMSNQAT GCVGPGSESA RGTQLPSDLI SNCVATALSI KRLSDSWHEF  960
DSITGVLDHA LSMLRPSCPE NLALYKQIER DIGILMSQIF ARVPTALGNC SPPVSPHVTG  1020
PWAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G033000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312052.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A1B6Q1850.0A0A1B6Q185_SORBI; Uncharacterized protein
STRINGSb03g003005.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Representative plantOGRP1282645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.29e-64DNA binding