PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G033500.1.p

Common Name

dof27, Dof27, Sb03g003050, SORBIDRAFT_03g003050

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 236aa MW: 24113.6 Da PI: 10.1796

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G033500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.9e-37	33	89	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s ntkfCyynny+lsqPryfCk+CrryWt+GGalrnvPvGg +rk Sobic.003G033500.1.p 33 PEGLPCPRCESVNTKFCYYNNYNLSQPRYFCKTCRRYWTRGGALRNVPVGGNTRKAT 89 57899*************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-23	32	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	36	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.518	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MVRSAAAMEA GQVPDGRALM AAVTTTGGGG REPEGLPCPR CESVNTKFCY YNNYNLSQPR 60 YFCKTCRRYW TRGGALRNVP VGGNTRKATP ATGRRKRSTP APVNVTVPAP ATASPPPPPA 120 LHGGSLLRPY GGGGGSGLLS FAAPALASPL AAADPDRRLL DFGGSFTSLI APGVADVGVH 180 FSAGFLMGGL APAALPRAPG SVAALPPPPP QQQPTVSQAL PEGMVWSMGW PDLSI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20287	2e-32	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G033500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582418	0.0	KC582418.1 Sorghum bicolor dof27 protein (dof27) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457194.2	1e-166	dof zinc finger protein DOF3.4
TrEMBL	A0A1B6Q141	1e-165	A0A1B6Q141_SORBI; Uncharacterized protein
STRING	Sb03g003050.1	1e-161	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-32	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Sobic.003G033500.1.p
Entrez Gene	8084351

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]