PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G037400.1.p
Common NameSb03g003360, SORBIDRAFT_03g003360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 261aa    MW: 26656.4 Da    PI: 6.492
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G037400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30137195159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh 
  Sobic.003G037400.1.p 137 LDDGFKWRKYGKKAVKSSPNPRNYYRCSSEGCGVKKRVERDSDDPRYVITTYDGVHNHA 195
                           59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-32125197IPR003657WRKY domain
SuperFamilySSF1182901.83E-27129197IPR003657WRKY domain
PROSITE profilePS5081132.374132197IPR003657WRKY domain
SMARTSM007747.1E-35137196IPR003657WRKY domain
PfamPF031063.4E-24138194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAASLGLAHD ASCYAAYPPA AAAASSYFPS PPPPGDLVAE FPPTAAATAM ADDYYYYYFQ  60
FGEEMGGARA PGCGGGYCSP PAPAFDNGMS LLSYGGVDGD GRRPMSGPAA GTGGNGGGGR  120
PPASRIGFRT RSEVDVLDDG FKWRKYGKKA VKSSPNPRNY YRCSSEGCGV KKRVERDSDD  180
PRYVITTYDG VHNHAAPGAA YLCPPPPRGA TATAAAPCFS SPCSGSASAA LVAAPSWSGA  240
FDAWEAQLAA AAAHSSESSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27127197777Probable WRKY transcription factor 4
2lex_A3e-27127197777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.190800.0shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G037400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455037.10.0probable WRKY transcription factor 50 isoform X1
TrEMBLC5XM150.0C5XM15_SORBI; Uncharacterized protein
STRINGSb03g003360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-38WRKY DNA-binding protein 51