PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G037400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 134aa    MW: 14230.7 Da    PI: 8.4333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G037400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.51.7e-1088109122
                           ---SS-EEEEEEE--TT-SS-E CS
                  WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                           ldDg++WrKYG+K vk+s++pr
  Sobic.003G037400.2.p  88 LDDGFKWRKYGKKAVKSSPNPR 109
                           59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-1076109IPR003657WRKY domain
SuperFamilySSF1182907.98E-980110IPR003657WRKY domain
PROSITE profilePS5081113.03583109IPR003657WRKY domain
SMARTSM007744.3E-488126IPR003657WRKY domain
PfamPF031063.5E-689110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MADDYYYYYF QFGEEMGGAR APGCGGGYCS PPAPAFDNGM SLLSYGGVDG DGRRPMSGPA  60
AGTGGNGGGG RPPASRIGFR TRSEVDVLDD GFKWRKYGKK AVKSSPNPRY STIQYDSGDH  120
FSSIPWSRSC MHA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.190800.0shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G037400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2464582e-97GQ246458.1 Saccharum officinarum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455037.12e-72probable WRKY transcription factor 50 isoform X1
TrEMBLA0A1W0VVL73e-91A0A1W0VVL7_SORBI; Uncharacterized protein
STRINGSb03g003360.17e-72(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-15WRKY DNA-binding protein 50