PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G040500.1.p
Common NameSb03g003610, SORBIDRAFT_03g003610
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 218aa    MW: 22949.4 Da    PI: 4.2961
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G040500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.81.4e-149517719100
                 NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100
                            +lP+ r+k+i+++d d++++++ea  l++ a elf+  l+  +   a    +rt++   + aa  ++  + dfl+d    +e
  Sobic.003G040500.1.p  95 PALPVGRVKRIMRVDRDINKVTSEATLLIAAATELFLGSLATGAHTAAARRGKRTVRAVHVRAAArAHRPTADFLLDCLAAEE 177
                           579**********************************************************88761566799*****987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-1895158IPR009072Histone-fold
SuperFamilySSF471135.2E-1695173IPR009072Histone-fold
PfamPF008082.3E-1397158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAAATADEPT VPMEEQPGKE SEEAAEAMEE QLEKESEEAA EAMEEQLGKE SEEATESAEA  60
MEQIEEEPEE GGDPAEAMEK DGEEAEAEEG ASLRPALPVG RVKRIMRVDR DINKVTSEAT  120
LLIAAATELF LGSLATGAHT AAARRGKRTV RAVHVRAAAR AHRPTADFLL DCLAAEEEAP  180
RVRKAAGSAG GGGGGGGEAK PLPRGTRRID AFFQKVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G040500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269580.0KJ726958.1 Zea mays clone pUT3656 CCAAT-HAP5 transcription factor (CA5P15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457226.11e-147nuclear transcription factor Y subunit C-2
TrEMBLC5XMM71e-145C5XMM7_SORBI; Uncharacterized protein
STRINGSb03g003610.11e-146(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Representative plantOGRP94721213