PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G046600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 191aa    MW: 20992.2 Da    PI: 9.251
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G046600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221372e-42511732128
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasas 89 
                           +s r+pt +ErEnn++RERrRR++aa+iyaGLRa+++y+lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g      a+   +s++ +
  Sobic.003G046600.2.p  51 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRAHAGYALPKHADQNDVLRALCAEAGYHVDDDGNVTRhQGVDDG--AAGPSCSSDHQ 137
                           789****************************************************************993344433..33333333333 PP

                DUF822  90 pesslqsslkssalaspvesysaspksssfpspssldsi 128
                           ++ s++    +++ a++ ++++  +++++ + +++ ++ 
  Sobic.003G046600.2.p 138 KSPSVS---GTTEAATQQQQQQLLQQQEQLLQQQQQQQQ 173
                           333333...122222222222222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.4E-3253156IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MERQAGAGRE EGEAAAAKAV APVVAQRKGC IRSTQGPWTV RRRGRGGGLT TSLRHPTPRE  60
RENNRQRERR RRQVAARIYA GLRAHAGYAL PKHADQNDVL RALCAEAGYH VDDDGNVTRH  120
QGVDDGAAGP SCSSDHQKSP SVSGTTEAAT QQQQQQLLQQ QEQLLQQQQQ QQQEEEVKMS  180
LELTLSFAYM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-1174119392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-1174119392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-1174119392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-1174119392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G046600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9477561e-124EU947756.1 Zea mays clone 356679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357917.12e-74uncharacterized LOC103649675
TrEMBLA0A1W0VVQ51e-135A0A1W0VVQ5_SORBI; Uncharacterized protein
STRINGSb03g004070.15e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132013032
Representative plantOGRP100841011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.31e-15BES1 family protein