PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G049400.1.p

Common Name

Sb03g004290, SORBIDRAFT_03g004290

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 197aa MW: 20655.6 Da PI: 10.6977

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G049400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.2	1.5e-12	104	164	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ Sobic.003G049400.1.p 104 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLEVRNAELEQRVSTLQNENNTLRQI 164 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	103	167	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.5E-11	104	165	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.208	105	168	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-16	108	167	No hit	No description
SuperFamily	SSF57959	6.88E-12	108	165	No hit	No description
CDD	cd14704	2.98E-13	108	158	No hit	No description
PROSITE pattern	PS00036	0	110	125	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAAQEQEHEK QQAKTSTTSS LPSSSERSSS SAPNNLREGG AESDEEIRRV PEMGGASASA 60 SSGAGADERP KEDGGKQGGQ LAAAAGAQPP AAAGKKRGRT AGDKEQNRLK RLLRNRVSAQ 120 QARERKKAYL TELEAKAKDL EVRNAELEQR VSTLQNENNT LRQILKNTTA HASKRSSGGG 180 GGKGGDGGKK HHFAKS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.15087	0.0	panicle

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G049400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU976642	0.0	EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455099.1	1e-136	transcription factor HY5 isoform X1
Swissprot	Q9SM50	3e-46	HY5_SOLLC; Transcription factor HY5
TrEMBL	C5XND8	1e-135	C5XND8_SORBI; Uncharacterized protein
STRING	Sb03g004290.1	1e-135	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111
Representative plant	OGRP2081	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	1e-29	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G049400.1.p
Entrez Gene	8078473

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]