PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G061400.2.p
Common NameSb03g005250, SORBIDRAFT_03g005250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 243aa    MW: 26212 Da    PI: 10.6756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G061400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-105498554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          h+e+ErrRR+riN  +++Lr+++P       + ++Ka+ L ++ve +k L
  Sobic.003G061400.2.p 54 HSEAERRRRERINAHLATLRRMIPDT-----RQMDKATLLARVVEQVKLL 98
                          9************************8.....68*******9999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-1340104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4434998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1253107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-85498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1055104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-4138180No hitNo description
CDDcd048731.39E-5138209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAACQPLQGK ELQPVLLPRQ ASSAPRAVRV APPEMSSSSG SGRSTTEARA LKIHSEAERR  60
RRERINAHLA TLRRMIPDTR QMDKATLLAR VVEQVKLLKR NASEATTQSV PLPPETDEVS  120
IELHTGAGAD KVIYIKASIS CDDRPDLVAG LAQAFHGLRL RTVRADMTSL GGRVQHVFVL  180
CKEEGWGGAG VGAASASLRS LKEAVRQALA RVASPETAYG SSSPFQSKRQ RILESHYSIM  240
SI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G061400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0640870.0BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457305.11e-175transcription factor bHLH51
RefseqXP_021311070.11e-175transcription factor bHLH51
RefseqXP_021311071.11e-175transcription factor bHLH51
TrEMBLC5XP741e-174C5XP74_SORBI; Uncharacterized protein
STRINGSb03g005250.11e-175(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-28bHLH family protein