PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G062300.1.p
Common NameSb03g005310, SORBIDRAFT_03g005310
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-X1
Protein Properties Length: 909aa    MW: 99787.1 Da    PI: 8.4369
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.16e-06264281118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG H+C   CH GpCppC
  Sobic.003G062300.1.p 264 CGLHRCPVDCHDGPCPPC 281
                           ****************** PP
2zf-NF-X118.25.3e-06371390119
              zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                           CG+H+C + CH+G C++ C+
  Sobic.003G062300.1.p 371 CGRHRCPERCHRGSCDEtCR 390
                           *******************8 PP
3zf-NF-X118.44.7e-06451470120
              zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                           CG+HkC ++CH+G C pCp+
  Sobic.003G062300.1.p 451 CGNHKCLSPCHRGVCSPCPL 470
                           ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590109161IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.55109162IPR001841Zinc finger, RING-type
SMARTSM004380.008211229IPR000967Zinc finger, NF-X1-type
PfamPF014220.01212228IPR000967Zinc finger, NF-X1-type
CDDcd060081.24E-8254302No hitNo description
PfamPF014221.4E-4264281IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0033264283IPR000967Zinc finger, NF-X1-type
CDDcd060082.92E-7307347No hitNo description
PfamPF014220.2317335IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092317336IPR000967Zinc finger, NF-X1-type
CDDcd060083.84E-8361410No hitNo description
PfamPF014220.0026371390IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0056371391IPR000967Zinc finger, NF-X1-type
CDDcd060081.77E-7414462No hitNo description
PfamPF014220.27424442IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13424443IPR000967Zinc finger, NF-X1-type
CDDcd060085.54E-10441489No hitNo description
PfamPF014222.1E-4451469IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011451470IPR000967Zinc finger, NF-X1-type
SMARTSM0043825514529IPR000967Zinc finger, NF-X1-type
PfamPF0142236518528IPR000967Zinc finger, NF-X1-type
PfamPF0142216537546IPR000967Zinc finger, NF-X1-type
SMARTSM00438220537582IPR000967Zinc finger, NF-X1-type
PfamPF014220.53619629IPR000967Zinc finger, NF-X1-type
SMARTSM0043893619658IPR000967Zinc finger, NF-X1-type
PfamPF014222.6671688IPR000967Zinc finger, NF-X1-type
SMARTSM004380.12671689IPR000967Zinc finger, NF-X1-type
SMARTSM004383.4734755IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MPSSYAAAAA GSSSRKPNRT SNAAASTARP PAPSPSRAPA APAVNPSVIS DSDPSSYSSS  60
SADEADLTAS DSATASVVSA YLSVAGEGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSSSCF AILHLPCIQS WAHQSASGAA VPCPTWGCPK CRFAYPKSET PSSYVCFCTK  180
TVDPAPDPWI LPHSCGDVCG RRLDANLDSG CEHTCLLLCH PGPCPPCPAV VPNARCFCGA  240
HREPRRCAHQ RYSCGRKCNK RLSCGLHRCP VDCHDGPCPP CAVQGSHKCE CGETMEEKLC  300
FERIFQCKRE CGGMLDCGKH RCERGCHGGK CGECPLRGRR TCPCGKKDYP RLECDAEAAT  360
CGSTCEKVLG CGRHRCPERC HRGSCDETCR LVITKACRCG GLKKEVPCYQ ELTCERKCQR  420
SRNCGRHACK RRCCARDCPP CSETCDKKLR CGNHKCLSPC HRGVCSPCPL MKTIPCACGK  480
TCFEVPCGTE KNQKPPKCSK KCSIPRLCRH KLECRPHKCH YGACPPCKLT CGEELSCGHT  540
CKERCHGPIS PPNPEFTLKP TKKKMGKHIE CTPGTPCPPC KEVVLVPCFG QHLGQERAMP  600
CCKWRPFPCE NLCGNPLLCG NHYCTKSCHV LEVPLNQPEG DRIASISKAN TLAEPCEQCN  660
LPCQRVREPR CSHPCPLPCH LSDCPSCKVL VKRPCHCGAM VHAFECVYFN NLNAKEQIKV  720
RTCGGPCHRK LPNCPHLCSE VCHPGICPSV DQCMKKVNIR CACNTLKQEW LCQDVLKEYR  780
KSGRDPKEVP KSQFGVGLLA CGEDCKKKLK APDSELHLRK SQENKSPAVE VVNVPKRRKR  840
RERGQEVKIS KFQEVKTYVL RVLLIILLSI IVAAGLYLLW KGIFWLSDWM NEMEEQRARQ  900
RHPRGAML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834840PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.118650.0ovary| pollen
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G062300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666630.0BT066663.1 Zea mays full-length cDNA clone ZM_BFb0042A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455165.10.0NF-X1-type zinc finger protein NFXL2 isoform X2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLC5XP820.0C5XP82_SORBI; Uncharacterized protein
STRINGSb03g005310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors