PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G076400.1.p

Common Name

Sb03g006430, SORBIDRAFT_03g006430

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

C2H2

Protein Properties

Length: 258aa MW: 28803.5 Da PI: 9.4771

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G076400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	227	250	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C+ +Fs++ ++++H+++ H Sobic.003G076400.1.p 227 YTCKLCSAVFSSQQMYHSHMSLlH 250 9*******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.954	227	251	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	229	250	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MERNSYPTKD TRFRQSDNEI SPLHEALRGK TTMPTLSSSE PNDHAHSFKS YYNNSEAIPH 60 QLHSVSTPIP PTSIIASTRL EQSLKKEQEL MRMFLTTPVS EDARRKALSL EPQSIKSLLQ 120 GDPMAILQAH FDIAGVSDPG PIFHDPALHV PKERMHKTLG SSSSSHDDLY GKIPYAKPTF 180 FNQPPVSSLV QREQHVPSGF PSSNSYDAIK EVMGSTINFR RVKKQKYTCK LCSAVFSSQQ 240 MYHSHMSLLH SKGIGNN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G076400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	1e-166	uncharacterized protein LOC8060818
TrEMBL	A0A1W0VW35	0.0	A0A1W0VW35_SORBI; Uncharacterized protein
STRING	Sb03g006430.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9
Representative plant	OGRP19637	2	2

Link Out ? help Back to Top
Phytozome	Sobic.003G076400.1.p
Entrez Gene	8060818