PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G076500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 294aa    MW: 32470.4 Da    PI: 9.3471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G076500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49e-103074447
                          S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                          WT+eE +++  a + l     +W+++a+ ++ gRt  +++s++ ++
  Sobic.003G076500.1.p 30 WTAEENKRFESALAGLDLChpDWEKVAQAIP-GRTVREVVSHFKNL 74
                          ****************99999**********.***********997 PP
2Myb_DNA-binding48.12.6e-15141185347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Sobic.003G076500.1.p 141 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 185
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.7152579IPR017884SANT domain
SMARTSM007176.6E-42677IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-42874IPR009057Homeodomain-like
SuperFamilySSF466891.15E-82979IPR009057Homeodomain-like
CDDcd001672.49E-73074No hitNo description
PfamPF002492.8E-73074IPR001005SANT/Myb domain
PROSITE profilePS5129418.359134190IPR017930Myb domain
SuperFamilySSF466896.21E-18135190IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-17137188IPR006447Myb domain, plants
SMARTSM007173.4E-13138188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12138184IPR009057Homeodomain-like
CDDcd001677.56E-12141186No hitNo description
PfamPF002499.8E-13141185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMREMYMDVL PPVDHIAARS NWFPAAARLW TAEENKRFES ALAGLDLCHP DWEKVAQAIP  60
GRTVREVVSH FKNLQLDVQQ IESGQVPLPV YGSGASSFTL QWDGNGGYGP GDFRHGYRFG  120
GGCGKRHHGR TPEQERKKGV PWTEEEHKLF LLGLKKYGKG DWRNISRNFV QTRTPTQVAS  180
HAQKYFIRLN SGGKDKRRSS IHDITTVNLT DEQPPSPSQS SLITNQSNAS APTAGIGQFS  240
LAADAKQHGS GNLPFNSPSR TSVMAAYRMD LQDQGLQCGP LHDQLVASQS ILF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.77380.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G076500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9568590.0EU956859.1 Zea mays clone 1575939 MYB-like transcription factor DIVARICATA mRNA, complete cds.
GenBankEU9699530.0EU969953.1 Zea mays clone 337779 MYB-like transcription factor DIVARICATA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455217.20.0transcription factor DIVARICATA
RefseqXP_021312949.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-79DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1B6Q1W40.0A0A1B6Q1W4_SORBI; Uncharacterized protein
STRINGGRMZM2G079458_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]