PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G077100.1.p
Common NameSb03g006500, SORBIDRAFT_03g006500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 257aa    MW: 27582.1 Da    PI: 6.5085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G077100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-0991136454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er RRdr+N  f  Lr  +P+      + ++ a+ L  Av YI +L
  Sobic.003G077100.1.p  91 THVEAERLRRDRLNRLFCDLRAAVPTV-----TGMDRASLLADAVGYITKL 136
                           89************************7.....579*************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.02187136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1490159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-791136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1391153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-793142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDDPHFMSPF SADDHRNQNP ASSEFMSSDA LEKWLLGNDQ DNVLDNHEDE DPHQDMSSTS  60
LPSPAAPLAG RKRGRKPGSG SRAAGTTIVV THVEAERLRR DRLNRLFCDL RAAVPTVTGM  120
DRASLLADAV GYITKLHGRV EQLQADAEAN KRTTAASLSQ LPCLLFGGSG QELEVRAVHG  180
RDAAALRLTT TVATRHAPAR LMAALRALDL PVQHASVCRV GGITVQDVVV DMAAAGLWGD  240
DCLRTVLLHK LLQESG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101RLRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G077100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457386.20.0transcription factor bHLH14
TrEMBLA0A1W0VW530.0A0A1W0VW53_SORBI; Uncharacterized protein
STRINGSb03g006500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-15bHLH family protein