PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G085600.1.p
Common NameSb03g007200, SORBIDRAFT_03g007200
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 345aa    MW: 36625.9 Da    PI: 4.5216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G085600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.5e-14122160346
                   AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                           y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Sobic.003G085600.1.p 122 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 160
                           9*****99.**********55.....45**********.7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-14121170IPR016177DNA-binding domain
PROSITE profilePS5103216.924121181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-18121172IPR001471AP2/ERF domain
SMARTSM003807.4E-12121185IPR001471AP2/ERF domain
PfamPF008473.3E-8121160IPR001471AP2/ERF domain
PRINTSPR003678.3E-8122133IPR001471AP2/ERF domain
CDDcd000182.84E-15122153No hitNo description
PRINTSPR003678.3E-8144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAPLNHHQVL IKKALAKKPN STKRMTGFGL KPSAALLKSR PQQQPPAPVQ PRRRVRVLFE  60
DPDATDSDSD DEEEAAGAPT TGPATRTKLF SFEAYIGKAP AKPVLPAATV AACTSGGAPE  120
SYRGVRLRKW GKWAAEIRNP FTGKRQWLGT FDTAGAASAA YLSASRSFAD EKRRRRGQAV  180
PASASSPATS ASATPTASSS SSTSTAPFAH PSPSSVLEST TKAAAPNPES PEPVATPTPV  240
VLPPSTESAA QLPDDPEFYQ DLLRGLQLPD IDPMDFRAGL DALDVSDAAF CLDDEQDLLL  300
GDFGDEELEI DLDLDDINDV FPEMPGCDLG RGMDDFLQTV DFCV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.148260.0callus| embryo| panicle| pollen| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G085600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457432.10.0ethylene-responsive transcription factor 3
TrEMBLC5XQV40.0C5XQV4_SORBI; Uncharacterized protein
STRINGSb03g007200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Representative plantOGRP1281645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.26e-13related to AP2 2