PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G088300.1.p
Common NameSb03g007410, SORBIDRAFT_03g007410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 167aa    MW: 18882.5 Da    PI: 10.2521
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G088300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-154785646
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          +eE++ll++++++lG++ W++Ia +++ gRt+k++ s+w+ 
  Sobic.003G088300.1.p 47 EEEEDLLIKLHTLLGNR-WSLIAGRLP-GRTAKEVESYWNR 85
                          8****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3023791IPR017930Myb domain
SMARTSM007172.4E-104189IPR001005SANT/Myb domain
SuperFamilySSF466894.29E-1242101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-174588IPR009057Homeodomain-like
PfamPF002498.8E-134785IPR001005SANT/Myb domain
CDDcd001672.05E-104785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPVNRMKQRR WGLSGLQLGN SRPSSSQRPA NTAVGPLVRS KNNCFCEEEE DLLIKLHTLL  60
GNRWSLIAGR LPGRTAKEVE SYWNRRMRSK LKCTGLDPEK HRTTTFHLLP DDDQQWRRRR  120
RPRNACKVGL PDAKAKHPDR PPPFNGKVEE EVVADDDCVS DAGSAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G088300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311767.11e-112transcription factor MYB80
TrEMBLA0A1B6Q2B01e-119A0A1B6Q2B0_SORBI; Uncharacterized protein
STRINGSb03g007410.11e-103(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2780155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-21myb domain protein 4