PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G088300.2.p

Common Name

Sb03g007410, SORBIDRAFT_03g007410

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB_related

Protein Properties

Length: 160aa MW: 18098.5 Da PI: 10.0501

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G088300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.4e-07	47	78	6	46
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +eE++ll++++++lG++ ++ gRt+k++ s+w+ Sobic.003G088300.2.p 47 EEEEDLLIKLHTLLGNR--------LP-GRTAKEVESYWNR 78 8************99.........***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-5	40	88	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-7	45	85	IPR009057	Homeodomain-like
CDD	cd00167	2.78E-5	47	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MPVNRMKQRR WGLSGLQLGN SRPSSSQRPA NTAVGPLVRS KNNCFCEEEE DLLIKLHTLL 60 GNRLPGRTAK EVESYWNRRM RSKLKCTGLD PEKHRTTTFH LLPDDDQQWR RRRRPRNACK 120 VGLPDAKAKH PDRPPPFNGK VEEEVVADDD CVSDAGSAC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G088300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311767.1	1e-104	transcription factor MYB80
TrEMBL	A0A1W0VW98	1e-114	A0A1W0VW98_SORBI; Uncharacterized protein
STRING	Sb03g007410.1	1e-106	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	5e-14	myb domain protein 9

Link Out ? help Back to Top
Phytozome	Sobic.003G088300.2.p
Entrez Gene	8070398